Thiorhodovibrio frisius: Thiofri_04189
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Entry
Thiofri_04189 CDS
T09561
Symbol
polA_1
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03030
DNA replication
tfri03410
Base excision repair
tfri03420
Nucleotide excision repair
tfri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thiofri_04189 (polA_1)
03410 Base excision repair
Thiofri_04189 (polA_1)
03420 Nucleotide excision repair
Thiofri_04189 (polA_1)
03440 Homologous recombination
Thiofri_04189 (polA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfri03032
]
Thiofri_04189 (polA_1)
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_04189 (polA_1)
Enzymes [BR:
tfri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Thiofri_04189 (polA_1)
DNA replication proteins [BR:
tfri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Thiofri_04189 (polA_1)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Thiofri_04189 (polA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thiofri_04189 (polA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WPL23980
LinkDB
All DBs
Position
4451494..4454211
Genome browser
AA seq
905 aa
AA seq
DB search
MSNVYDLVLLDASGYLFRAYHALPKLSNSRGEPTGALVGVLNMIRSLCERYQPRYIGVVF
DAPGPTFRNALFADYKANRPEMPADLREQIDPLREIVRALGLPLLIIPEVEADDVLGTLA
TRAEAAGLRTLISTGDKDLAQLVTDRIHLINTMSDSLLDPDGVREKFGVPPERIVDYLSL
MGDSVDNIPGVPKCGPKTAVKWLGEYGDLDGVMAHADKIGGKVGENLRESLSQLPLARQL
TTIKRDLELELAPEDLSPGAPDSDSLRTWYERIESRRLLATLEAVADPEASSGTDPQASP
KIEVDYQVILTEADFASWLERLQAAELFAVDTETTALDYMQAEIVGLSFAITPGDAAYLP
LAHCYPGAPTQLKRNEILTALKPLLEDPTRRKLGQNLKYDMNVLAGHGIALQGVAHDSML
QSYVLDSTASRHDMDTLALKYLGHQCIAFKDIAGKGAKQLRFDQIDLEQAAPYAAEDADI
TLQLHRSFWPRLEQTPSLKQLYQEIEIPLIPVLSRMERLGVRIDAEELGKQSRELAERIA
ELEEKSYQAAGRKFNLGSPKQIGQIFFEELGLPVLSRTPKGAPSTAESVLEKLAEDGHEL
PHLILEHRGLSKLRSTYTDKLPRMRNPESGRVHTSYHQAVAATGRLSSSDPNLQNIPIRR
EEGRRIRRAFIPEPGYRLVAADYSQIELRIMAHLSGDQRLLAAFAAGADVHRATAAEIHG
LPPEEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIERREAQAYVDTYFARYPGVKAFME
RIREQAGRDRYVETIFGRRLYLPDINHTNQQRRQGAERTAINAPMQGSAADIIKRAMITV
DDWIQREQPPVRMIMQVHDELVFEIANEAIDAATSQIRELMQSAAELKVPLIVDIGVGEN
WDEAH
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgtctacgatctcgtgctgctcgacgcatcaggttacctgttccgcgcctat
catgccctgcccaagctcagtaactcgcgcggtgagccgaccggcgccctggttggcgtg
ctaaacatgatccgtagtttatgcgagcgttatcaaccccgctatatcggtgtggtgttc
gacgctcccggaccaacctttcgcaacgccctctttgctgactacaaggccaaccgcccg
gagatgccggcggacttgcgcgaacagatcgacccgctgcgcgagattgtgcgcgcactc
gggctgccgttgttgatcatccccgaggtagaagccgatgacgtgctcggcaccctggcg
acccgcgccgaggcggccgggctgcgcacgctgatttctaccggcgataaggatctggcg
caactggtgacagatcgcattcatctgatcaacaccatgagcgacagtctgctcgacccc
gatggcgtgcgtgagaagttcggcgtgccgcctgaacgaattgtggactatttgagcctg
atgggcgacagcgtcgacaacattcccggcgtacccaagtgcggtcccaagacggcagtc
aagtggctcggcgagtatggcgatcttgatggcgtgatggcgcacgccgataagattggc
ggcaaggtcggtgagaacctgcgcgagagcctttcgcaactgcccttggcacggcaactc
accaccatcaagcgcgatctagagcttgaactggcaccggaggatctcagtcccggcgcc
ccggacagcgacagcctgcgcacctggtatgagcgcatcgaatcgcgccggctgctggca
acgctcgaggccgtggcagaccccgaggcttcgagcgggaccgacccccaagccagcccc
aagatcgaggtggactaccaggtcatcttgaccgaagcggatttcgcgagctggcttgag
cgcctgcaagccgccgagctgttcgccgtcgataccgaaaccaccgcgctcgattatatg
caagccgagatcgtcgggctgtcctttgccattacgcccggcgatgccgcttatttgccg
ctcgcgcactgctaccccggcgctccgacccaacttaagcgcaacgagattctcaccgcg
ctcaagccgttgctggaagatccaacccggcgcaagctcgggcagaatctcaaatacgac
atgaacgtgcttgccggccatggcatcgcgctccaaggcgtcgcccacgacagcatgctc
cagagctatgtgctcgacagcaccgcgagccgccacgacatggacaccctggcgctgaaa
tacctcggccaccagtgcatcgcattcaaggacatcgccggcaagggtgcgaaacagctg
cgcttcgatcaaatcgacctcgagcaggccgcgccctatgccgccgaggatgccgacatc
accctgcaactgcatcgcagcttctggccaaggctcgagcagacaccaagcctgaagcag
ctgtatcaagaaatcgaaatcccgctgatcccggttctttcgcgcatggagcgcttaggt
gtgcgcattgatgccgaggaactcggcaaacaaagccgcgagttagccgagcgcatcgcc
gagcttgaggagaagtcctatcaggccgccgggcgcaagttcaatctcggatcacccaag
cagatcggccaaatcttcttcgaggaactgggcctgccggtgctctcgcgcacgcctaag
ggcgcgccatcaacagcggaatcagtcctcgaaaaactcgccgaggacggacacgagctg
ccgcacctgatccttgagcatcgcggcctgtcgaagttgcgctccacctacaccgacaaa
ttgccgcgcatgcgcaaccccgaatccggccgggtgcataccagctaccaccaagcggtc
gccgccaccggacgcctatcctccagcgaccccaatttgcaaaatatacccatccgtcgc
gaagagggccggcgcattcgccgtgcctttatccccgaacccggctatcggctggtggca
gcggattattctcagatcgagctgcgcattatggcgcatctgtccggtgaccaacgtctg
ctggccgcctttgccgccggggccgatgtgcatcgcgccaccgcagcggaaatccatggc
ctgccgccagaggaggttacctcagaccagcgccgctcggccaaggcgatcaacttcggg
ctcatttacggcatgtccgccttcggcctcgcgcgccagcttggcattgagcggcgtgag
gcccaagcctacgtggatacctattttgcccgctacccaggggtaaaagcctttatggag
cggattcgcgagcaggccggacgcgaccgctatgtcgagacaatcttcggtcgccgactt
tatctgccggacatcaaccacaccaatcagcagcgccgccagggtgctgagcgcaccgcc
atcaacgcccccatgcagggcagcgcggcggacattatcaagcgcgccatgatcaccgtc
gatgactggatccagcgcgagcaaccgccggtgcggatgatcatgcaggtccatgatgag
ctggtatttgagattgccaatgaagctattgatgccgccactagccagatccgcgagctg
atgcagtcagccgccgagctgaaggtgccgctgattgtcgatatcggcgtgggggaaaat
tgggatgaggcgcattag
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