Thiorhodovibrio frisius: Thiofri_04727
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Entry
Thiofri_04727 CDS
T09561
Symbol
rpoN1
Name
(GenBank) RNA polymerase sigma-54 factor 1
KO
K03092
RNA polymerase sigma-54 factor
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri02020
Two-component system
tfri02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Thiofri_04727 (rpoN1)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Thiofri_04727 (rpoN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfri03021
]
Thiofri_04727 (rpoN1)
Transcription machinery [BR:
tfri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Thiofri_04727 (rpoN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WPL24507
LinkDB
All DBs
Position
complement(5051559..5053067)
Genome browser
AA seq
502 aa
AA seq
DB search
MKQTIQLRLGQQLTMTPQLQQAIKLLQLSTLDLQQEIQQALESNLMLENADDDLPEPGTR
EDRLNQDEASAQRLEEARLDSSLRPERDGMPDELPTDSEWTDTFADTSDSYAPSSGAQSG
AQSGSQSGDSNDFDLFAQRSRPQTLHDYIDWQLNLTRFGARDQAVAEALIDAIDADGYLH
LDLSELPAILNDPELEPDEIEAVLHRIQSFDPPGLAARDLRECLILQLRQLTDHQPRRDH
ALSICEHHFDALGRNDLDAMRRGTKLSDDDLGQALTLIRSLNPRPGSAVTEVQPEYIKPD
VLVRRRHGRWTVELNPDTTPRIRVNESYRQLIRRADKAADNQCLKSHLQEAQWFIKSLLS
RNDTVLRVATKIVELQQDFFDFGEEAMRPLVLRDIAETLELHESTVSRVTTQKYMHTPRG
TFEFKYFFSSHVNTTSGGECSSTAIRAFIRKLVAAETPNKPLSDNKIAEVLSDQGIKVAR
RTVAKYREAMGIPPSNERKRLA
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagaccattcaactgcgcctcggccagcagctgacgatgacgccgcagctgcag
caagcgattaagctgctgcagctctcgaccctggatctccagcaggaaatccagcaggcg
cttgagtccaacctgatgctcgagaacgccgatgacgacctgccggagccaggcacccgc
gaagaccgcctgaatcaggatgaggccagcgcgcagcgtctcgaagaggcgcgactcgat
agctcgttgcgccccgagcgcgacggcatgcccgacgagttgcccaccgacagcgaatgg
accgacactttcgccgatacctccgacagctacgcgccaagcagcggtgcccaatccggt
gctcaatctggcagccagtccggcgacagcaatgatttcgacctcttcgcccagcgctcg
cgcccgcagacgctgcatgactacatcgactggcagctcaacctgacccgtttcggcgcg
cgcgaccaagccgttgccgaggcgctgatcgacgccattgacgccgacggctacctgcat
ctggacctgagcgaattgcccgcgattctgaacgacccggaacttgagccggacgagatt
gaagccgtgctccatcgcatccagagcttcgatccgccgggtctcgcggcacgcgacctg
cgcgaatgcctgatcctgcaactgcgtcagctgaccgatcaccagccgcgacgcgaccat
gccctgagcatctgcgagcaccatttcgatgctctggggcgcaacgatctggacgccatg
cgccgtggcaccaagctcagcgacgatgacttgggccaggcactgacgctgatccgctcc
ctgaacccgcgcccagggtcggccgtgaccgaggtgcaaccggaatacatcaagcccgac
gtgctggtgcgccgtcgccacggccgctggacagtggagcttaacccggataccacgccg
cgaattcgcgtcaacgagagttacaggcagctcattcggcgtgccgataaggccgccgac
aatcagtgcctgaaatcccatctgcaagaggcgcagtggtttatcaaaagcctgctgagt
cgcaatgacaccgtgctgcgggtagcgaccaaaattgtcgagctgcagcaggactttttc
gattttggcgaagaggccatgcgcccgctggtgctgcgcgacatcgccgagacgctggag
ctgcatgaatccaccgtctcgcgcgtgacaacgcagaaatacatgcacacccccaggggc
accttcgagttcaaatatttcttttcaagtcacgtcaacaccacttcagggggtgagtgt
tcatcgaccgccatccgcgcctttatccgcaaactggtcgccgcagagacgcctaataag
cctctgagtgacaacaaaattgccgaggttctgtcggatcagggcatcaaggtggcacga
cgaacagtcgccaaataccgcgaagccatgggcatcccgccctcgaacgagcgcaagcgg
ctcgcatga
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