Takifugu flavidus (sansaifugu): 130513083
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Entry
130513083 CDS
T09160
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130513083 (nrde2)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130513083 (nrde2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
130513083
NCBI-ProteinID:
XP_056867632
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All DBs
Position
16:complement(11408129..11416420)
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AA seq
1196 aa
AA seq
DB search
MRRSVMALFPAFAEVEPKRAESSSKGELDWLNNKTFQTGDAISLHNCFLETTKNVRTEKE
QSLDSQLSSPHEEQERLLPKKKKKKSEKKRKNKKHKKKSGKYSDSSGSESETIYPSDLKR
EEENGSQAAPLASSFSWLDDVQLPTAQLFCVDRKPDPANWTYKSLYRGDIAKYRRKGNSS
LGLDPRKQEVSWEESQSKKKKKGTNKKAADRYYSAVNRQMLKSEALVSIFPTNSECSGAT
GPALFLPLTDDQENTKGPPGGDVQSTAVNPLGVYDSSTTLWLQGKGQQVHAEQEKSEPSA
TPLTGRTEEFNRQLREQPTDTQLWIKFIKFQDELSTTVFGNEEGEQGITSVDRRKSSYRA
VLEKKLSIAERAIATNPCSITLQLERLKICQELLEPSVLAKEWKKLVFLHPNSAPLWREY
LLFTQSYFSSFAVSKVNAAYGKCLSTLSAVRDGSMVSHPALPGVEEDMLDIFIQQCHFLR
QAGHSEKAISLFQAMMDFTFFKPDSVQKLTTKQQVEFFEPFWDSGEARVGEIGARGWKMW
MLQQERGGWIQPSEEEEEEEEEDEEEVKDRSQPRHTIWLDVESSREAAHWLPWRPDKAKG
QSEEDCEDPDRQVLFDDIGPSLILLPSPELQLRLLVQFLAFLGLPTDFALSAAPRSPDIL
LENLSLLTHGVDPQRPLTYQDLPDTGVNPVGLMTTLQGNRKWVGLGKQGEKFVANLLKMV
QPVLRVDSQTNLALSRMRYEKLKVLRCLCSGNKKRLRSQGKSSKRIAKQLLKESDNRSSL
VLWREYGHLEWLIGNLEEARKVFSTAMALGGNKGLRNPALCDLCLLWAQLEVEEVARAPG
AGLTDVTASPALHVLTQLAEAASPASQTLSPVSILKARKLYDQALTARLSALDQTRKKGQ
EDPPGENIRLRGLAGSYALFQYLTVGIQAANAVYSQARERMEALHHSLISNMQNVSEKDD
SLARAADASHSEADSSHTQDSVSRLASDCEALAVQQAALLRYHKSVSVFPLATVREMLTS
ALSTWPTSAPLWSIYVQVENRYHSAGRARRFFHSITRSNSCMVPRLFAIVAEQQRKQLID
AALGSCGPCVALPTLPENGLSNRIRGLFENIVSKEAGSRCPLVWRMYMHFLVSDGKIEKA
LGIFYKALQNVPWAKGVYMDGVQLFPGRIQEFVDVMTEKELRLRLPIEELDILLEE
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgctctgtaatggcgctgtttccagcttttgccgaagtagaacccaaaagagct
gaatcttcctctaaaggtgaattagattggctcaataataaaacctttcagactggcgat
gccatctctcttcataattgttttttggagacgactaaaaatgtcaggactgagaaggaa
caaagtctggacagtcaattaagctcgccacatgaggaacaggaaaggcttctgcccaag
aaaaagaaaaagaaaagtgagaagaagaggaagaacaagaaacacaaaaagaaaagtggg
aagtattcagacagcagcggctctgaatctgaaaccatttaccccagcgatctcaaaaga
gaagaggaaaatggatcacaggccgcaccattagcaagcagtttctcctggttggatgac
gtccagttacccacagcgcagctgttctgtgtggaccgtaaaccagacccagccaattgg
acgtataaatccctgtacagaggagacatagcaaagtataggaggaaaggcaactcttct
ttgggactggacccacgtaaacaagaagtcagctgggaggaatcgcagtcaaagaagaag
aagaaaggcacaaacaagaaagcagcggacagatattactctgcagtcaaccgtcagatg
ctgaagtctgaggcgcttgtttctatattcccaacaaattctgaatgcagtggtgccact
ggccctgctttatttcttccactgactgatgatcaggagaacacaaaaggaccacctggc
ggcgatgtgcagtcgacagccgtgaatcctctgggggtgtatgactcctctactaccctc
tggctccaggggaagggacagcaggtgcatgcagaacaggagaagtcagagccaagtgca
acacctctgactgggagaactgaagagtttaacaggcagctgagagagcagccaactgac
acacagctatggataaagtttataaaattccaggatgagttgagcacaacagtgtttgga
aatgaagaaggcgaacaaggtattacttcagttgaccgtcgaaagtcttcctaccgagca
gtcctggagaaaaagctgagtattgcggagcgtgcaattgccaccaacccctgctccata
actctgcagctggagagactcaagatctgccaggaactcttggagccttcagttctggcc
aaagagtggaagaaactggtgttccttcatccaaacagtgcccccttgtggcgagagtac
ctactgttcactcagagctacttcagcagtttcgcagtgtcaaaggtcaacgctgcctat
gggaagtgtctgagcaccctcagtgcggtgcgtgacggcagcatggtctctcatccagcc
ctgccgggagttgaggaggacatgttggatatcttcatccaacagtgccacttcctccgt
caggctggtcattcggagaaggccatttctctgttccaagccatgatggattttactttt
tttaaacccgacagcgtccaaaaattgaccaccaagcagcaggttgaattctttgagcca
ttctgggacagtggagaggcgagggttggagagataggagccagaggctggaaaatgtgg
atgctccagcaagaaagaggcgggtggatacagcccagcgaagaggaagaagaggaggaa
gaagaggatgaggaggaagtgaaggatcgcagccagccgcgacacacaatctggttggat
gtggagtcgtctcgggaggccgctcactggctgccctggaggcctgataaggccaagggt
cagtcagaagaggactgtgaggatccagaccgacaggtgctgtttgatgacatcggtcct
tccctcattttactgccctcaccggagctccagcttcgtcttcttgtgcagtttctggcg
ttcctggggctgcccactgactttgcgctctctgcagcccctcgtagtcctgatatccta
ctggagaacctttctctcctcactcacggtgtcgacccccaacgtcctctgacctaccaa
gacctacccgacactggggtcaaccctgtagggctcatgacaactcttcagggaaacagg
aagtgggtagggctcggcaagcaaggagagaaatttgttgccaatcttttaaaaatggtc
cagcctgttcttcgtgttgactctcaaactaatttagcactcagccggatgcgctatgaa
aaactcaaggtcttgcgctgcctgtgtagtggcaacaaaaagcgcctccgctctcaaggg
aagagcagcaagcgaatagcaaagcagcttctcaaggagtcagacaaccgctcgtcgctg
gttctgtggagggagtacggccacctggagtggctgataggcaacctagaagaggctcgc
aaagtcttttctacagcaatggcattaggtggcaacaaagggttgagaaaccctgctctc
tgtgacctgtgtctgctgtgggctcagctggaggtggaggaggtagcacgtgcgccgggc
gcagggcttacagatgtcactgcgtctccagccctgcatgtgctaacacaactagcagaa
gcagcatccccagcctcccagaccctgtctccagtttccatcctgaaagcacggaagtta
tatgaccaggccttgactgccagattatcagctctggaccagaccaggaaaaaaggccaa
gaggatcctccaggagagaacattaggctcaggggcttggctggaagctatgctcttttc
cagtacctcacagtgggaattcaagcagctaatgctgtctatagccaggctagagagagg
atggaggcgctacaccacagtctgatctccaacatgcagaatgttagcgaaaaagatgac
agccttgctcgggccgccgacgccagccactccgaggctgattccagccacacgcaggac
tcagtgagcaggctggcttctgactgcgaggcactagcagtccagcaggcagcattgctc
agatatcataagagtgtcagtgtgtttcccttggcaacagtgagagagatgctgacctct
gccctctccacctggcccaccagcgcccctctttggagcatatatgtacaggtggagaat
cggtaccacagtgctggtcgtgcacgccgcttttttcattctataactaggagcaacagc
tgcatggtgccacgcctttttgccattgttgctgaacaacaaaggaagcagttgatagat
gctgctctggggtcctgtggcccatgcgttgccttgcccaccctgccagagaatggactc
agcaaccgcatacggggattgttcgaaaacatcgtatcaaaagaggccggttctcgctgc
cctctagtctggagaatgtacatgcacttcctggtttcagatgggaagatagagaaagct
ctcgggatcttttataaggctttacagaatgtgccctgggccaagggtgtgtacatggac
ggagtgcagttgttccccgggcgcatacaggagtttgtcgatgtgatgacggagaaagaa
ctccgactgagactgcctatagaagaactggacatactcctggaggagtaa
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