Takifugu flavidus (sansaifugu): 130513112
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Entry
130513112 CDS
T09160
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03013
Nucleocytoplasmic transport
tfs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130513112 (srrm1)
03015 mRNA surveillance pathway
130513112 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130513112 (srrm1)
03041 Spliceosome [BR:
tfs03041
]
130513112 (srrm1)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130513112 (srrm1)
Spliceosome [BR:
tfs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
130513112 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
130513112
NCBI-ProteinID:
XP_056867681
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All DBs
Position
16:11102809..11110453
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AA seq
853 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITKRVNDIL
GFEDDVVIEFIFNQLEEKHPDAKMMQINLTGFLNGKNAREFLKDLWPLLLSAQENIAGIP
SVFLEQKKEEIRQRQIEQEKLASLKKVDESKKEKDTRERAQSRSPRRRKTKSPSPRRRSP
AKRERKRSLSHSPRRKPSPAAAASPPPLMQMATKPVEQLVEPEVSGRASPEPVIQDTTRD
TVVEVKKVEALNEVKEASPEKPQKKEEPPRSREKERDVRRERPHHRSRSHSRSRRRRSRS
RSYSPRRRQSPRRRMSPRRRSPPRRGPTASRHRHRRSPVRSRRRSRSASSSGSSSSGSPS
PKKAVKRVSSTPPRKQGHHLEASVSPSGKDRRSPSPRARRGRASASPPRSSGFKRKPERG
DSSSDNVKARPSDASESDEDKNGKGAATDSVQQRRQYRRQNQESSSDTGSSSSEDEAPSR
PKSGPSARNGEVRRRRSRTPSPRRRHRDVSPRKRRSPSPGRRRRSPSPPRRRRSPSPRRR
SPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRRLSSSPVRRSPPMAKRRPSRSPKRRG
SPPQRRRSPPFSQSPPRHRRSPVAARRSRDTRSPGAAPSRLSPSPANRGHALRRSASPQG
RFDSSGTSPFSQRRKSPPHSGKPIRRVSRTPEPRSNPRQSPSPQPMRTASSRSVSPPPAT
LKRPAAASASPSPTRSTSASPPPPAKKASSGSGSRSPSKTSDVEGGGKKKKKKKEKKHKK
DKKHKKHKKHKKEKSGGAAAGDGQEVQPAEEDGDSRKDSESEADDGLDDLEKHLREKALR
SMRKAQLSPSQMS
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcactagtgcggagcaagacaaccggttcagcaacaag
cagaagaaactactgaaacaactgaaatttgcagaatgcctggacaaaaaggttgacatg
accaaagtgaacctggaagtcatcaaaccttggattactaagcgagtgaatgacattcta
ggcttcgaggatgatgtcgttatagagtttatatttaaccagcttgaggagaagcaccca
gatgccaagatgatgcagatcaatctgacgggcttcttgaatggcaaaaatgctcgggag
ttcttgaaggatctgtggcccttgttgctcagtgcccaggagaacatagcaggcatccct
tcagttttcctggaacagaagaaagaggaaattagacaaagacagattgaacaggagaag
cttgcgtcgctgaaaaaggttgatgaaagcaagaaggaaaaggacacgagagagagggcc
cagtccaggagcccaagaagacgaaagacaaagtcaccatctccacggcgacggtcgcca
gcaaagcgggaaagaaagcgcagcttgtcacactctcccaggcgtaaacccagtccagct
gcagctgcttcaccaccaccactcatgcagatggccaccaaaccagtggagcagttggta
gagcccgaagtatccgggagagcctcaccagaaccagttatccaagacactacccgtgac
acagtggttgaggtgaagaaagtagaagctttaaatgaagtcaaagaagcttctccagag
aagccgcagaagaaagaagaaccgccgcgttcccgggaaaaggagcgggacgtcaggaga
gagaggccacaccaccgctctcgctctcattcccgctctcgccgccgacggtcccgttct
aggtcttactctccgagaagaagacagagtccgagaaggagaatgtctcctcgtcgcagg
agccccccgagacgtgggccaacggcctctaggcacagacacagacgttctcctgtccgc
agcaggaggcgctctcgctccgcctcatcaagtggcagcagctcctccggctccccctca
cctaaaaaggcagtgaaacgcgtatcaagcacaccacctcgcaaacagggtcatcatctt
gaggcctctgtgagcccttcaggcaaagacaggcgatcgccttcaccacgggccaggagg
ggccgagcttctgcatccccccccagatcatctggtttcaagcgaaaaccagaaaggggc
gactcttcctctgataacgtcaaggctcgaccttccgacgcatccgagtctgatgaggat
aaaaacgggaaaggagcagcgacggattcggtgcagcaacgccgccagtatcgcaggcag
aatcaggagtcgtcctcagatacaggatcatcctcttctgaggacgaggcgcccagtagg
ccaaaatctgggccaagtgccagaaacggagaggtcagaaggaggcgtagtcgtacgcct
tccccgcggcggcgccatagagacgtctcgcctaggaaaaggcggtctccttctcctgga
cgaaggcggcgctctccttcacctccacgccgccgccgctctccatctccgagacgaagg
tctccgtctccgccgccccgtcgtcgctctccgtcaccgaggcgatattctccccccatc
cagcgtcgctacagcccctcccctctgccgccacagaagcggaggttgtccagctctccc
gtcaggcgctcccctcccatggccaagcgtcggccctccaggtctcccaagcgccggggt
tctcctcctcagagaaggcgctcgcctccgttctcccagtctccacccagacacaggagg
agcccggtggctgcccggaggagccgagacacccgatccccgggcgccgcccccagccgc
ctctctccttcccccgcaaaccgcggccacgctctgaggcgttccgccagtcctcaaggg
cgttttgattcctccggcacgtctccgttcagccagaggagaaaatctcctccccacagt
ggcaaacccatccgcagagtgtcgcgaaccccggagccgcgcagcaaccccagacaatct
ccaagtcctcagcccatgagaactgcttcctctagatctgtctcgcctccaccagccact
ctcaaacgtccagcggctgcatccgcctccccgtcaccaactcgctcaaccagcgcctct
ccgccgccgccggccaaaaaggccagcagtggctcagggagtcgatccccaagcaagact
tcggacgttgagggaggcggcaagaagaagaagaagaagaaggaaaagaaacacaaaaaa
gacaagaagcataagaagcacaagaagcataagaaagagaagagcggaggtgccgcagct
ggggatggacaggaagtccagcccgcggaggaggacggagactcaagaaaggattctgag
agcgaagcggacgatggcttggacgatctggagaagcacctgagggaaaaggctctgcgc
tccatgagaaaggcccagctgtctccatcccagatgtcctga
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