Takifugu flavidus (sansaifugu): 130513312
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Entry
130513312 CDS
T09160
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs04140
Autophagy - animal
tfs04142
Lysosome biogenesis
tfs04145
Phagocytosis
tfs04148
Efferocytosis
tfs05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
130513312 (vps39)
04142 Lysosome biogenesis
130513312 (vps39)
04140 Autophagy - animal
130513312 (vps39)
04148 Efferocytosis
130513312 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
130513312 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tfs04131
]
130513312 (vps39)
Membrane trafficking [BR:
tfs04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
130513312 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
DUF8438
Motif
Other DBs
NCBI-GeneID:
130513312
NCBI-ProteinID:
XP_056868046
LinkDB
All DBs
Position
16:13660775..13669633
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AA seq
901 aa
AA seq
DB search
MHDAYEPVPILEKLPIQIDCLAAWDDWLLVGTKPGHLLLYRIKKDAGRKGYPTLNGYWFG
IVNACVYLYLTGSNRFEVTLEKSIKNFSKKIQQLHVVSQYKILVSLLENNIQVHDLLTFQ
QITGLPKAKGATLFACDLQQTSQGEERLRMCVAVKKKLQLYYWKDREFYELEGDLAAPDI
PKSMAWCENSICVGFKRDYYLIRIDGRGSIKELFPTGKQLEPLVAPLADGKVIVVQEDQT
VVLNEEGACTQKCPLTWTDIPIAMEHQPPYIIAVLSRCVEIRTFEPRMLVQCVELQRPKF
IASAGPNIVYVASNHFVWRLVPVSISSQIEQLLQDKQFELALQLAKMKDDSDGDKKQQIN
HIQNLYGFNLFCQKRFDDSMQVFAKLGTDPTHVIGLYPDLLPSDYRRQLHYPNPLPALSG
AELEKAHLALIDYLTQKRSRLVKHLNDSDPSTTSPLMEGTPTIKSQRKLLQIIDTTLLQC
YLHTNVALVSPLLRLENNHCHIEESEYVLKKAHKYSELIILYEKKGLHRKALQVLLDQST
KANSPLKGHERTVQYLQRLGTENLGIIFEFSPWVLKICPEDGLKIFTEDLTEVENLPRDK
VLHFLMEGFKELTIPYLEHIISAWDDESPEFHNVLIQLYLERVQSLMKQYLNSLPEGVEA
VAAGKEEGDLGEFRTKLLSFLDTSSSYQPAKLISDFPFDGLLEERALLLGRMGKHEQALL
IYVHILKATRMAEDYCQRHYDSSLEGNKDVYLSLLRMYLSTPDAHCLGPIKLQLSEPQAN
LKEALQVLKLHHSKLNTTKALNLLPANVQIKEIQVFLESVLEEKAQRKRCNQVVKSLLQA
EFLRVQEERIFHQQVKCVITDEKTCRVCKKKIGSSAFARYPNGVVVHYFCCKDRSACPAE
Q
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctatgaaccggtgcctattttggaaaagttgcctattcagattgactgt
cttgcggcctgggatgactggctgcttgtggggacgaagcctggacatctgctcctctac
aggatcaagaaggatgcaggtaggaagggttaccccactttgaatggttattggtttgga
attgtaaatgcatgtgtatatctttacctgacaggctccaaccggtttgaagtgacgctg
gagaaatcgattaagaacttttcaaaaaagattcaacagcttcacgtcgtctcacagtac
aaaatactcgttagtctactggagaacaacatccaggtgcacgacctcctcaccttccag
cagatcactgggctgcctaaagcgaaaggagccacactcttcgcctgtgatctgcagcaa
accagccaaggagaggaaagactgagaatgtgtgtggccgtgaaaaagaaactgcagctt
tattactggaaggatagagagttctatgaactggagggggatctggcagctccggatatt
ccgaagtctatggcgtggtgtgaaaactccatatgtgttggtttcaaacgagactattac
ctcattcggattgatggtcgtggttccatcaaggaactcttccccactgggaagcagctg
gagccgctggttgccccactggctgatgggaaggtgattgttgttcaggaagaccaaacc
gtggtgctgaatgaagaaggagcctgcacccagaagtgccccctcacctggacagacatt
cccatcgcaatggagcaccagcctccgtacatcatcgctgtgctttctcgctgcgtggag
atccgcaccttcgagcccaggatgctggtgcagtgtgtggagctgcagaggccgaagttc
atcgcttcggcagggccaaatattgtgtacgttgccagcaaccactttgtttggcgcctg
gttcccgtgtcgatatccagccaaatcgagcagcttcttcaggacaagcagtttgagctg
gctcttcagctggcgaagatgaaggatgactcggatggagacaagaagcagcagattaat
cacatccagaatctgtacggcttcaacctcttttgccagaagagatttgatgactcaatg
caggtgtttgccaagcttggcacagatccgactcatgtgatcggcctgtatccagacctg
cttccatcagactaccgccgccagctgcactatcccaaccccctgccagcgctgtccggt
gcagagctggagaaggcccacctggctctcatagactacctgacacagaaacgcagccgc
cttgtgaagcatttgaacgactctgacccctccacgacgtctcccctcatggaaggcact
ccgaccatcaaaagccagagaaagcttctgcagatcatcgataccacgctgctgcagtgt
tacctgcacaccaatgtggccctggtgtcccccctcctccgcctggaaaataaccactgc
cacatcgaggagagcgagtacgtcctgaagaaggcccacaagtacagcgagctcatcatc
ctctatgagaagaagggtctgcatcgaaaagctctgcaggtgctcctggatcagtccacc
aaggccaactctccgctgaagggtcacgagcgcactgtgcagtacctccagagactggga
actgagaatttgggaatcatctttgagttttctccctgggtgctgaagatctgtcctgag
gacggcctgaagatcttcactgaggacctgacagaagtggagaacctacccagagacaag
gtgctccacttcctgatggagggctttaaggagctcaccatcccatatttagagcacatt
atctctgcgtgggacgatgagagcccagagttccacaacgtgctgatccagctctacctg
gagagggttcagagcctcatgaaacagtacctgaactccctgccagaaggagtggaggct
gttgctgcggggaaggaggagggagatctgggggagttcaggaccaagctgctgtctttc
ctggacacgtccagcagctaccaaccagccaaactcatcagcgacttcccctttgatggc
ttgctggaggagcgggcgttgctcctgggccggatgggtaaacacgagcaggctctttta
atctacgtgcacatcctgaaagccacccgcatggctgaggactactgtcagcgacactac
gacagttccctggagggcaataaagacgtgtatttgtctttgctgcggatgtacctgtcc
acccccgacgcccactgtctggggcccatcaagctgcagctgtcggagccccaggccaac
ctgaaggaggcgctgcaggtgctgaagctgcaccacagcaagctcaacaccaccaaggcc
ctcaacctgcttccagcaaacgttcagatcaaggagatccaggtcttcctggagagcgtc
ctggaggagaaggcccagaggaaacgctgcaaccaggtggtgaagagtctgctgcaggcc
gagttcctcagggtgcaggaggagcgaatcttccaccagcaggtcaaatgtgtcattacg
gatgaaaagacctgccgagtctgcaaaaagaagataggaagcagtgcgtttgccaggtac
cccaacggcgtggtggtgcattacttctgctgcaaggatcgcagcgcctgtcccgctgag
cagtga
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