Takifugu flavidus (sansaifugu): 130514655
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Entry
130514655 CDS
T09160
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130514655 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130514655 (ddx5)
03009 Ribosome biogenesis [BR:
tfs03009
]
130514655 (ddx5)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130514655 (ddx5)
Spliceosome [BR:
tfs03041
]
Complex A
U1 snRNP components
U1 related factors
130514655 (ddx5)
Complex B
130514655 (ddx5)
Ribosome biogenesis [BR:
tfs03009
]
Eukaryotic type
Pre-60S particles
Helicases
130514655 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130514655
NCBI-ProteinID:
XP_056870339
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All DBs
Position
18:473172..478262
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AA seq
610 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGNRGGGGGGNKYGNPGDRLRKKHWNLDELPKFEKN
FYQQHPDAARRSLQEVEQYRRSKTITFKGRECPNPILKFEEASFPSYVMDVINKQNFTEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQAFLERGDGPICLVLAPTR
ELAQQVQQVAQEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEY
VQINIGALQLSANHNILQIVDVCSDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFD
YPNNSEDYIHRIGRTARSQKTGTAYTFFTHNNVRQAGDLVSVLREANQAINPKLLQMVED
RGRRGGRGGDFRDDRRDRFSGRRDFGGYRDRDNNRGYDKSFGANSQNGGYGGSNGTSNGF
TGYGNGQSTFTNQTGAFPGQNNFQAQQFPPSKNGAQPAATHTPFPFSQTQALPQHPTPLV
PYAMPPQFTQ
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtattccgatagagatcgcggcagagacagggataggggctatggcggtggg
cctccccgctttggtggcaaccgtggtggaggcggtggtggaaacaaatacggcaatcct
ggagaccgtctgcggaagaaacactggaacctggacgagctccccaagtttgagaaaaac
ttttatcaacagcatcccgatgccgctagaagatcgttgcaagaagttgagcaatataga
cgatctaaaaccattacatttaagggaagagaatgtcccaatcctattctaaaattcgag
gaggcaagctttccatcttatgtgatggatgtgatcaacaaacagaatttcacagaaccg
acccctattcaggctcagggctggcctcttgcgctcagtggcaaggacatggttggcatt
gcacagactggctctggcaaaacactttcttatctgttgcctgctattgtgcacattaac
catcaagcattcctggaacgtggagatggtcccatttgtctggtgctcgcaccaactcgt
gagctggcacaacaggtgcagcaagtggctcaggaatatggcagagcttctcgccttaag
tccacctgcatctatggtggtgctcccaaagggccccagatccgtgacctggaaagaggt
gtggagatctgtattgccactccaggaaggctcattgacttccttgaatcaggaaagaca
aatctccgcagatgcacttaccttgtgctggatgaggcagacagaatgttggacatgggt
tttgagccacagatccggaaaattgtcgaccaaattagaccggaccgtcaaactttgatg
tggagtgccacttggccaaaagaggttcgtcagttggccgaagattttctaaaggaatat
gtacagatcaacatcggtgcactgcagcttagtgccaaccacaacattctgcagattgtg
gatgtgtgcagtgatggagagaaggaaaacaaacttattcgcttgcttgaagaaattatg
agtgaaaaggagaacaagaccatcatatttgtggaaacgaagaggcggtgtgatgatctc
accagaagaatgagaagggatgggtggccagctatgggcatccatggagataaaagccag
caggaaagagactgggttctcaatgagttcaaatatggcaaagccccgatcctcattgcc
actgatgttgcttccaggggtctagatgttgaagacgtgaaatttgtcatcaactttgac
tacccaaacaactctgaggactatattcatcgtattggccgaacagctcgtagccaaaag
acggggactgcttataccttcttcacccataacaatgtgagacaggcaggcgaccttgtc
tctgtgctccgtgaagccaaccaggcaatcaaccccaagctcctacaaatggtggaagac
agagggcggagaggaggcaggggtggcgacttcagagatgaccggcgggatcgattctct
ggaaggcgtgactttggtggttatagggaccgcgataacaatcggggttatgacaaatct
tttggcgcaaattctcaaaatggtggttatggcggcagtaatggcaccagcaatggtttc
actggctatggcaatggacagtcaacttttaccaaccagacaggagcgtttccaggccag
aacaacttccaggcccagcagtttccaccaagtaagaatggtgctcagcctgctgctacc
cacaccccatttcctttctctcagacacaagcgctaccacagcaccctacaccgctggtg
ccctatgcgatgccacctcagttcactcagtaa
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