Takifugu flavidus (sansaifugu): 130515205
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Entry
130515205 CDS
T09160
Symbol
col1a1a
Name
(RefSeq) collagen, type I, alpha 1a isoform X1
KO
K06236
collagen type I alpha
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs04510
Focal adhesion
tfs04512
ECM-receptor interaction
tfs04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130515205 (col1a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130515205 (col1a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130515205 (col1a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tfs00536
]
130515205 (col1a1a)
Glycosaminoglycan binding proteins [BR:
tfs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130515205 (col1a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
130515205
NCBI-ProteinID:
XP_056871322
LinkDB
All DBs
Position
18:complement(3173424..3188010)
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AA seq
1448 aa
AA seq
DB search
MFSFVDLRLALLLSAAVLLVRAQGEDDRIGGSCTLDGQVFEDRHVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPIIPEDECCPICPDDGFQEPQVEGPTGQRGPRGDRGPAGPPGRD
GMPGQPGPVGPPGPPGPPGLGGNFSPQMSHGYDDKSSPAMAVPGPMGPMGPRGPPGPAGA
SGPQGFTGPPGEPGEAGSAGAMGPRGPPGPPGKNGEDGESGKPGRGGERGPAGPQGARGF
PGTPGLPGIKGHRGFSGLDGAKGDTGPAGPKGEAGAPGENGTPGAMGPRGLPGERGRAGA
PGPAGARGNDGAAGAAGPPGPTGPAGPAGFPGGPGAKGEAGAQGARGGEGPAGARGEPGN
PGPAGPAGPSGAPGNDGAAGAKGNPGAAGVAGAPGFPGPRGPPGPQGAAGAPGPKGNTGD
VGAPGAKGEPGAKGEAGAAGVQGPPGPSGEEGKRGARGEPGPAGARGAPGERGGPGGRGF
PGADGPAGPKGATGERGAPGIGGPKGATGESGRTGEPGLPGAKGMTGSPGSPGPDGKMGP
AGAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGEAGKTGERGAMGAPGAAGAPGKDGD
VGAPGPAGPAGVQGERGEQGPAGGPGFQGLPGPQGAAGETGKPGEQGVPGEAGAPGPAGS
RGDRGFPGERGAPGAAGPTGGRGSPGPAGNDGAKGDSGAPGNPGAQGPPGLQGMPGERGA
AGLPGLRGDRGDQGQKGADGAPGKDGPRGLTGAIGLPGPAGASGDKGEPGPAGAVGPAGA
RGAPGERGEAGPPGPAGFAGPPGAEGQPGAKGDAGENGAKGDAGPSGPAGPTGAPGPQGP
VGNTGPKGSRGPSGPPGATGFPGAVGRVGPPGPSGNPGPPGPSGPAGKEGPKGNRGDTGP
AGRTGEMGAVGAPGPSGEKGSPGAEGPSGAPGLPGPQGIGGGRGIVGLPGQRGERGFPGA
PGPSGETGKPGGVGPAGERGPPGPMGPPGLAGPAGEPGREGSPGNEGASGRDGAAGPKGD
RGESGPAGASGAPGPPGAPGPVGPAGKNGDRGETGPGGPAGPAGPAGPRGPAGAAGLRGD
KGESGEAGERGMKGHRGFTGPQGPPGPSGAVGEQGPAGSAGPAGPRGPSGSAGSPGKDGM
SGLPGPTGPPGPRGRSGEMGPAGPPGPAGPPGAPGAPGGGFDLGFISQPQEKAPDPYRMF
RADDANVLRDRDLEVDSTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWI
DPDQGCTQDAIKVFCNMDTGETCVRPAQSEVAKKTWYLSKNMKEKKHVWFGEAMNDGFQF
EYGSEGSQPEDVNIQLTFLRLMSTEASQNITYHCKNSVAYMDASAGNLKKALLLQGSNEI
EIRAEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGL
EVGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctggcgctgctgctcagcgcagcagtgctcctggtc
agggcgcagggcgaggatgaccgcattggcggtagctgcaccttagacggccaggtgttt
gaggaccggcacgtatggaaaccagagccatgccagatctgtgtgtgcgacagcggcaca
gtcatgtgcgacgaggtcatctgcgaggacacaacagactgccccaacccaattattccc
gaagatgagtgctgccccatctgccccgacgacggcttccaagagcctcaggttgaggga
ccaacaggacagcgtggacccaggggagacaggggtcccgccggtccccctggtagggat
ggtatgcccggtcagcctggacctgttggacctcctggacctcctggaccccctggcctt
ggtggaaatttctcccctcagatgtctcatggctatgatgacaaatcatctcctgccatg
gctgtgcctggacccatgggcccaatgggacctcgtggaccccctggacctgctggtgct
agtggacctcagggattcactggcccccctggtgagcctggtgaggccggatctgctgga
gccatgggtccccgtggcccccctggccctcctggaaagaatggcgaggatggcgagtct
ggcaaaccaggtcgtggtggtgagcgtggacctgctggcccacagggagcccgtggtttc
ccaggaacccccggtctgcctggcatcaagggacacagaggattcagtggtctggatggt
gctaagggagacaccggccctgctggacccaagggagaggctggagcccctggtgagaat
ggaacccctggtgctatgggacctcgtggtctgcctggtgagagaggccgcgctggtgct
cctggacctgctggagctcgtggtaacgatggtgccgctggtgctgctggacctcccggt
cccactggccccgctggacctgcaggattccccggtggccctggagccaagggagaggcc
ggagctcagggtgctcgtggaggcgaaggccccgctggagcccgtggtgaacctggtaac
cctggacctgctggcccagctggaccttctggcgcccctggaaacgatggagccgctgga
gctaagggaaaccctggtgctgctggagttgctggtgctcctggattccctggaccccgt
ggacccccaggacctcagggtgctgctggtgcccccggacctaagggaaacactggtgat
gtcggtgccccaggagccaagggagagcctggtgccaagggagaggctggtgccgctgga
gttcaaggacccccaggaccttctggtgaggagggcaagaggggagccagaggcgagcct
ggtcccgctggagcccgtggagctcccggagagagaggtggtcccggtggtcgtggtttc
cctggtgctgatggccctgctggacccaaaggagccactggtgagcgcggtgctcccggc
attggtggacctaaaggtgccactggtgagagtggccgcactggtgagcctggcttgccc
ggagctaagggtatgactggcagtcctggcagccctggacccgatggcaaaatgggacct
gctggtgcacctggtcaagatggtcgccctggaccccctggttccgttggagctagaggc
cagcctggagtcatgggattcccaggacccaagggagctgctggtgaggctggaaagact
ggtgagagaggagcaatgggagcccctggcgctgctggtgcccctggaaaggacggtgat
gttggtgctccaggtcccgctggacctgctggcgttcaaggtgagagaggagagcaggga
cctgctggaggacctggattccagggtcttccaggaccccagggtgctgctggtgagact
ggcaagcctggagagcagggtgtcccaggtgaggctggagccccaggaccagctggttca
agaggtgacagaggtttccccggtgagcgcggtgcacctggcgctgctggacccactggt
ggccgcggttcccctggacctgccggaaatgatggtgctaagggagattctggagctcct
ggtaaccctggtgctcaaggtcctcctggactgcagggaatgcccggtgagcgtggtgcc
gctggtcttccaggacttaggggagacagaggtgatcaaggacagaagggtgctgatggt
gcccccggtaaggatggcccccgtggtttgactggagcaattggacttcctggaccagct
ggtgcctctggagacaagggagagcctggccctgctggagctgttggacctgccggagct
cgtggagcccctggtgagcgcggagaggctggaccacctggacctgctggatttgctgga
cctcctggtgctgagggacagcctggtgccaagggagatgctggagagaatggtgctaag
ggagacgctggtccctccggacctgctggacccactggtgcccctggacctcagggtccc
gttggaaacactggccccaagggatctcgtggacccagtggacctcctggtgctactgga
ttccctggtgctgttggtagagttggacctcccggcccctctggcaaccctggaccaccc
ggaccctctggacctgctggcaaagaaggacccaaaggaaaccgtggtgataccggacct
gctggtcgcactggcgagatgggtgctgttggagccccaggaccttccggagagaagggt
agccctggtgccgagggtccctctggtgctcctggtctgcctggacctcagggtataggt
ggaggccgtggtattgttggtctgcctggacagagaggagagagaggtttccctggtgcc
ccaggaccttctggagagacaggaaagccgggaggagttggtcccgctggtgagcgtgga
cctcctggacccatgggaccccccggcctggctggacccgctggtgagcctggacgcgag
ggatcccctggtaacgagggagcatctggtcgtgatggagccgctggacccaagggagac
cgtggagagtccggccccgctggagcttctggtgcccctggaccccctggtgcccctgga
cccgttggacccgctggaaagaacggtgaccgtggagagactggacccggtggccctgct
ggtcctgctggccctgctggacctcgtggccctgctggagctgctggacttcgtggagac
aagggagagagtggtgaggctggagaaagaggcatgaagggacacagaggatttactggc
ccacaaggaccccctggaccttctggagctgttggagagcagggacctgctggttctgct
ggacccgctggacctagaggcccctctggttctgctggttctcctggtaaagatggtatg
agtggcctgcccggacccactggacctcctggaccccgtggacgttctggagaaatggga
cctgctggtcctcccggacctgctggaccccctggagcaccaggtgcccctggtggtgga
ttcgaccttggcttcatctctcagccacaggagaaggcccccgatccctaccgcatgttc
cgtgctgacgacgctaacgttctccgtgaccgcgaccttgaggtggacagcactctgaag
agcctgagccagcagatcgaacagatccgcagccccgatggtacccgcaagaaccctgcc
agaacctgccgtgacctgaagatgtgccacccagactggaagagcggcgagtactggatt
gaccctgaccagggctgcactcaagatgccatcaaggtcttctgcaacatggacacagga
gagacctgcgtgcgtcccgctcagagcgaggttgccaagaagacctggtacctcagcaag
aacatgaaggagaagaagcacgtctggttcggcgaggctatgaacgacggcttccagttc
gaatatggcagcgagggctctcagcctgaggatgtcaacatccagctgaccttcctgcgt
ctcatgtccactgaggcctcccagaacatcacctaccactgcaagaacagcgtcgcctac
atggacgcttctgccggaaacctcaagaaggctctgctcctccagggctccaacgaaatc
gagatcagagcagagggcaacagccgcttcacctacagtgtcctggaggacggttgcacg
tcacacaccggtacatggggcaagacagtcatcgactacaagacatcgaaaacatctcgc
ctgcccatcattgatatcgctcctatggatgttggtgctccagaccaagagttcggcctt
gaagttggacccgtctgcttcttgtaa
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integrated database retrieval system
