Takifugu flavidus (sansaifugu): 130515745
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Entry
130515745 CDS
T09160
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130515745 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130515745 (cdc40)
Spliceosome [BR:
tfs03041
]
Complex C
Other components
Step II factors
130515745 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
EIF3I
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
PQQ_2
Motif
Other DBs
NCBI-GeneID:
130515745
NCBI-ProteinID:
XP_056872189
LinkDB
All DBs
Position
19:complement(7477753..7483918)
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AA seq
581 aa
AA seq
DB search
MSAAISSLVSYGSDSDPENDSESNKSTEKEDQTHPDATAHLQPLESGHTMSLALLNAAPE
VPVKEAVMTGSYLDPSLKEVAFNPTYETMFSPEFGPTNPFNNQQMAAARNMLSGYAEPAH
LNDFMFEQQRRTFSTFGYALDPSVDSNQISSSSFIGAVDEAEKNKGLTVFDSGHKKPDKR
KKIKGGDAEEIDNFLGPWAKYVDEKSVAKPTEEEKKELDEITAKRQKRGKIQDEAPGEEK
TILHIKDMYDYQGRSYLHIPQDVGVSLRSSDAPDKCYLPKKQLHVWSGHTKGVSGIRLFP
KSGHLLLSCSMDCKIKLWEVYKERRCIRTFIGHSKAVRDICFNNTGSQFLSAAYDRYLKL
WDSETGKCISHFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNSKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccatatcttccctcgtttcctacgggagcgattctgatcctgaaaatgat
tcggaatctaacaaaagcaccgaaaaagaggaccaaacgcacccagacgccacagcccat
ctccaacccttggaatccggacatacgatgtcgttggcgctcctcaatgctgctccggag
gttcctgttaaagaggctgttatgactggctcatacctggacccatcattaaaagaagtc
gccttcaatccgacgtatgaaaccatgttttcaccagagtttggcccaacaaacccattt
aataaccagcagatggctgcagccaggaacatgttatctggttatgcagaacctgcccac
ctgaatgacttcatgtttgaacagcaaaggagaaccttctccacctttggttacgcttta
gatccatctgttgactccaaccagatatcctctagtagcttcattggggcagtagatgaa
gctgagaaaaataaagggctaactgtgtttgatagtggacataagaagccagataaaagg
aaaaaaatcaaaggaggcgatgcagaagagattgacaacttccttggtccgtgggcgaaa
tacgtagatgagaaatctgtggccaagccaacagaggaggagaaaaaggaactggatgag
atcacagccaagaggcagaagaggggaaagattcaggatgaggctccaggagaggagaaa
accatccttcatatcaaagacatgtatgactaccagggcagatcttacctccatatccca
caggatgtgggtgtcagtcttcggtcttcagatgctccagataagtgttatctgcccaag
aaacagcttcatgtttggtctggacacactaagggggtcagtggaatccggctatttccc
aagtctggtcacctgctgctctcctgctccatggactgtaaaatcaagctgtgggaggtt
tacaaagaaagaagatgcatacggacatttatcggccacagcaaagcagtgcgagatatc
tgcttcaacaacactggttcccagttcctcagtgcagcctacgaccgctatctcaaactc
tgggactctgagacaggcaaatgcatctcacacttcaccaacaggaaggtcccgtactgt
gtcaaattcaaccccgacgaggacaaacagaacctctttgtggccgggatgtcagataag
aagattgttcagtgggacattaggacaggcgaggtggtgcaggagtatgaccgtcacctg
ggagccgtcaacaccatcaccttcgtggatgaaaatcgtcgatttgtcagtacatcagat
gacaagagtcttcgtgtgtgggagtgggacatccctgtggacttcaaatacatcgcagag
cccagcatgcactccatgccggctgtgacgctttctcccaatagtaagtggctcgcctgt
cagtccatggacaatcagatcctgatttttggggcacagaaccgcttcagactgaacaag
aagaagatcttcaaaggtcacatggtagcagggtatgcctgccaggtggacttctcccca
gacatgagttatgtggtgtctggagatgcagatggaaagctgaacatatgggactggaag
accaccaagctttaccaccggatcaaggctcacgacaaggtgtgcatcagcgccctgtgg
catccgcacgagacctccaaggtcatcacctgcgggtgggatggacagataaaactctgg
gactag
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