Takifugu flavidus (sansaifugu): 130515804
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Entry
130515804 CDS
T09160
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130515804 (ddx1)
03016 Transfer RNA biogenesis [BR:
tfs03016
]
130515804 (ddx1)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130515804 (ddx1)
Spliceosome [BR:
tfs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130515804 (ddx1)
Transfer RNA biogenesis [BR:
tfs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130515804 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
130515804
NCBI-ProteinID:
XP_056872274
LinkDB
All DBs
Position
19:9016110..9021096
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AA seq
739 aa
AA seq
DB search
MAFSEMGVMPEIAQAVEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI
QIVYETLKDQQEGKKGRTSIKTGGAIFNNWQMNPYDRSPAFAIGPDGLCCQSREFKEWHG
CRSTKGVTKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFDS
YGEEFTMHDTIGCYLDLEQAQISFSKNGTDLGLAFEIPQQLKNQPFFASCVLKNAELKFN
FGGESFKYTPKSGFLALDKASEGHTAKSSQTGSAKVSQVKTSSNAPKALIIEPSKELAEQ
TLNNVKQFKKYVDNPKLRELLVIGGVAAKEQLSALEQGVDIIVGTPGRLDDLISTGKLSL
SQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTPDGKRLQVIVCSATLHSFDVKKLSER
IMHFPTWVDLKGEDSVPETVHHVVVPVNPKLDRLWERLGKNRIRTDEVHAKDNTRTGANS
AEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKSHQFS
CVCLHGDRKPNERKNNLERFKRKEVRLLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH
RIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEEGGCTIWYNEKELLSD
IEEHLKCTITQCEPDIKVPVDEFDGKVSYGQRRALGGSNYKGHVDVLAPTVQELAGLERE
AQSSFLHLGYLKNQLFRAF
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttctgagatgggcgttatgcccgaaatcgcacaggctgtggaagaactagac
tggctgcttccaactgacatccaggcggagtctattcctcttattcttggtggaggagac
gtgctaatggcggcagaaactggtagtggcaaaacaggggccttcagtatcccagtgatt
caaattgtgtatgaaaccttaaaggatcagcaggaagggaagaagggtagaacctctatc
aaaactggaggagctattttcaataattggcagatgaatccttatgaccgcagtccagca
tttgcaattggcccagatggattgtgttgccagagcagagagtttaaagagtggcatggc
tgccgttctaccaaaggagtcaccaaagggaagtattactatgaggtgacatgtcacgac
cagggtctgtgccgcatcggctggtccaccagtcaggcagccctcgacttgggaactgac
aaatatggctttggttttggaggaactgggaagaaatctaataacaaacagtttgacagc
tatggagaggaatttacgatgcatgacactattggttgttacctggatcttgagcaagct
caaatctcattctcaaaaaatggtactgacctggggttggcgtttgagatccctcaacaa
ttaaaaaatcagcccttctttgcctcctgtgtgctgaagaatgctgagctgaagttcaat
tttggaggagaaagctttaaatacacacctaagagtgggttccttgccttggataaggca
tcagaggggcacacagcaaagtcctctcagacaggcagtgccaaagtgagccaggtgaaa
acatcctctaacgcacccaaagcgctgatcattgagccttctaaagaactggctgaacaa
accctcaacaatgtcaaacagtttaagaaatatgtggataaccccaaactcagggaactt
ctggtgattggtggtgtggctgctaaagagcagctgagtgcacttgaacaaggagttgac
attattgttggaacacctggaagactggatgatctcatatcaactggtaaactcagtcta
tcccaagtccgctttctcgttctggatgagtgtgatggtctgctatccgcaggttacaca
gattttatcaacaggatccacaatcaaatcccgcaggtcactcctgatggcaaaaggctg
caggtcattgtttgttcagcaactctgcattcattcgatgtgaagaagttgtcagagcgc
atcatgcatttcccaacatgggtggatctgaagggggaggactctgtcccggagaccgtc
caccatgtggtcgtacctgtaaatcccaaattggatcgcctctgggagcgcctgggcaag
aatcgcattcggactgatgaggtccacgctaaagataacaccagaactggagctaattct
gctgaaatgtggtccgaagctattaagatcctgaagggcgagtacacagtcagggccatc
aaagagcacaagatggaccaggccataatcttctgtcgtaccaagatcgactgtgacaac
atggaacagtatttcatccagcaaggaggaggtcctgacagcaaaagccaccagttttcc
tgcgtttgtctccatggtgatcgtaaacctaatgaaaggaaaaacaacttggaacgtttc
aagaggaaagaggtgaggcttttgatctgcacggatgtcgcagccagaggaattgacatc
catggagttccttatgtgattaacgtcaccctgccggatgagaagcagaactacgtgcac
cgtatcggcagagttggcagagctgagagaatgggcctggccatctccttggtcgctatg
gagaaggagaaggtgtggtaccacgtctgccccaaccgaggccgcggctgctacaacacc
cggctgaaggaagagggaggctgcaccatctggtacaacgagaaagagctcctgtctgac
attgaggagcatctgaagtgcaccatcacccagtgtgaacctgacattaaagtgcccgtg
gatgagtttgatggaaaggtctcgtatggtcagcgcagagcgttgggaggcagtaactac
aagggtcatgtggacgttctggcccccacagtccaggagctggcaggcctcgagcgggaa
gcccagagttccttcctccatctgggatacttgaaaaaccagctttttagagctttttga
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