Takifugu flavidus (sansaifugu): 130516561
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Entry
130516561 CDS
T09160
Symbol
hnrnpub
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein Ub isoform X1
KO
K12888
heterogeneous nuclear ribonucleoprotein U
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130516561 (hnrnpub)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130516561 (hnrnpub)
Spliceosome [BR:
tfs03041
]
Common components
Common spliceosomal components
hnRNP proteins
130516561 (hnrnpub)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
Zeta_toxin
CPT
AAA_22
AAA
AAA_18
KTI12
Motif
Other DBs
NCBI-GeneID:
130516561
NCBI-ProteinID:
XP_056873654
LinkDB
All DBs
Position
19:complement(12279797..12287810)
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AA seq
818 aa
AA seq
DB search
MSSIDVKKLKVNELKDELKRRNLSDKGLKADLMDRLQAALNEEALASHPDEEAAEDDGFD
QPTEQEVMGEDEDEDEEGPVEESMEANEAEEEQSDNGGAAVGVGVGVGVGVDEEMVEGEE
NVEENVEENVDEDDDMDPMLKADVDDMEKIDADDGEPGDQAAEGDADKDTNADQKNKKGV
KRRREEHGRGYYEFIEENKYSWASFKSPVPPLEEEDEDIDDTKVCLDAYNCDLHFKVSRD
RYSASSLTMESFAYLWSGGKATYGVDKGKACFEMKITEKIPVKHISSKNMDIHDVQVGWS
LATGTLLLGEEELSFGYSSKGKKTSNCVTEEFGETFEENDVICCLIDFDGDEVVMSYCKN
GGEPSTAFQISKDSLSGQALFPHIICHNCAVEFNFGQMETPYFPQPEGFTFLQQIPVDDR
VRGPRGPQTKADCEIIVMVGLPGSGKTTWVKNHVQENPGKYYILSSDTIVDKMMINSLKR
QSKDITKLTTISQRAPLFLGKFIEIAARKKRNYILDHTNVSAPGQKRKMCLFAGFQRKAV
VVCPSEEDYKQRVQQKVETDGKEVPEHAILKMKGFYALPEEGESFIEIIYAELQKEEASK
LLEQYREESKTALPAEKKPNQGSTMPKRGSGQRGGGRGGKNQFGRGSGPGHRGGSRGGFQ
NRGNYRGGPGPHCGFSRPPRNFLPPLNIRGGYPGRGNFNRGHMPILGGSPRGGPMRGNMG
PRGGHMNRGGPGHRGNMNRGGGGQMNRGGHRGHPGQYNQRGGNRGNYGNKNGNFNNRNSG
NFGGNRNGMDKAQAFNQSWQQGFWNQKPWSQQYQPGYY
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgagctccatcgacgttaaaaaactgaaagttaacgagctgaaggatgagctgaaaagg
cgtaatctgtcggacaaggggctgaaggccgacctgatggaccgcctgcaggccgcgctc
aacgaggaggccctggcctcgcatccggacgaggaggcagcggaggacgacggcttcgac
cagcccaccgagcaagaggttatgggggaggacgaggacgaggacgaggaaggcccggta
gaggagagcatggaagccaacgaggcggaggaggaacagagcgataatggaggcgcagcg
gttggcgtcggcgtcggcgttggcgttggcgttgacgaggagatggtcgagggggaggaa
aacgtcgaggaaaacgtcgaggaaaacgtcgatgaagacgatgacatggacccgatgctc
aaggcagacgtcgacgacatggagaaaatagacgcagacgatggtgagcccggggatcag
gctgctgagggggatgcggacaaagacacgaatgctgatcagaagaataagaagggtgtt
aagagacgccgggaggaacatggaaggggctactatgaatttattgaagaaaacaaatac
agctgggcttcatttaagagtcctgttccgccgctggaggaagaagatgaggacattgat
gacacaaaagtttgcctggatgcatacaactgcgacctgcattttaaggtgtcccgggat
cgttacagtgcctcctctctgacgatggagagttttgcctacctctggtctggaggcaag
gccacctacggtgtagataaaggcaaagcttgctttgagatgaagattacagagaagatt
cccgtaaagcacatttccagcaagaacatggacattcatgacgtccaggtcgggtggtcc
ctggctactggcactctgctcctgggtgaggaagaattgtcctttggatactccagcaaa
ggcaaaaagacaagcaactgtgtgacggaggagtttggagaaacctttgaggagaatgat
gtcatctgctgcctcattgactttgacggcgatgaggtggtgatgtcatactgcaagaac
ggcggcgagccatccactgcattccagatcagcaaggacagcctgagtggccaggccctt
ttcccccacatcatctgtcacaactgtgctgtggagttcaactttggacagatggagact
ccgtacttccctcagcccgaaggcttcaccttcctgcagcagatccccgttgacgacaga
gtccgtggacccaggggccctcagaccaaggcggattgtgagatcatagtgatggtcggc
ctgccgggctcagggaagaccacatgggtgaagaaccacgtgcaggagaaccctgggaaa
tactacatcctcagtagtgacaccatcgtggacaagatgatgatcaacagcctgaagcgg
cagtccaaagacatcacaaagctgaccaccatctcccaacgagcgccgcttttcctggga
aaatttattgaaatcgctgcccgaaagaagaggaactacattctggatcatactaatgtg
tcggccccgggccagaagcggaagatgtgcttgttcgccggcttccagcgcaaagctgtg
gtggtctgtccttctgaggaggactacaagcagagggtccagcagaaggtggagactgat
ggcaaagaggtgcccgagcacgccatcctcaaaatgaaaggcttctatgctcttcccgag
gagggggagagcttcattgagatcatctacgcagagctgcagaaagaggaggcctccaag
ctgctggagcagtacagggaggagagcaagaccgctctgcccgccgagaagaagcccaac
cagggaagcacgatgcccaagagaggcagcggccagcgcggaggcggccgcggaggcaag
aaccagtttggacgggggtctggacctggacacagaggaggctcccgtggaggcttccag
aacagaggcaactacagaggaggtccaggcccgcactgtggtttctcccgcccaccacgc
aacttcctgcctccactgaacatcagaggaggctaccccggacgtggaaacttcaaccgt
ggccacatgcccatcctgggtgggtcgccgaggggcggccccatgaggggtaacatggga
ccccgaggggggcacatgaacagaggcggtccagggcatcgagggaacatgaacagagga
ggcggaggccagatgaatcgtggaggacacagaggacaccccggccagtacaatcagaga
ggtggtaaccgcggcaactatggcaacaagaacggcaacttcaacaaccgaaacagtggc
aactttggcggcaacaggaatggcatggacaaggcccaagcgttcaaccagagctggcag
caggggttctggaaccagaagccctggagtcagcagtaccagcctggctattactaa
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