Takifugu flavidus (sansaifugu): 130516840
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Entry
130516840 CDS
T09160
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130516840 (ythdc2)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130516840 (ythdc2)
Spliceosome [BR:
tfs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130516840 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
R3H
Helicase_C
DEAD
HA2_N
AAA_19
nSTAND3
Ank_2
ATPase
AAA_22
AAA_7
ResIII
T2SSE
TrwB_AAD_bind
SRP54
Ank
FtsK_SpoIIIE
PhoH
Motif
Other DBs
NCBI-GeneID:
130516840
NCBI-ProteinID:
XP_056874127
LinkDB
All DBs
Position
20:11008853..11024010
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AA seq
1374 aa
AA seq
DB search
MLRAVASAKKPGKSQKGRLRSIPNALRKIHIDEEVKIALNLSLERFYYSDQKVMEFPSSL
SSNERAFLHRAAQSLGYSSKSKGKGPNRFLTVTKKDGPDKPQHSMLLNPSHNTLFVIHNL
LERFPISNKERVDMQLSTRSAASLVSEAENALDKNKASGRLNKGIPVVPPQRGSSEHDAF
RCSLPVQEHKQEIIKLIRENRVVLVVGATGSGKTTQIPQFLLDECHKNHEPCRIFCTQPR
RLATITVADRVAAERGENVGKTVGYHIRLESRVSPKTVLTFCTSGVFLRTLMAGDASLTT
VTHVIVDEVHERDGLTDFLLTKLRDVLPKFPSLKLILCSAALDTELFRQYFGSCPVINLK
GRLFDVKEFFLEDILKLTGFKKKEMMNHNAEAHEPKNKQKSLTEWCETLKNTSVEEEEGT
SVLSCVPEDSSVLDGEDGALNSLPENNPEQLEPWLVREMDSCISNIFLNEDQDAFIQLFN
LILYENMNVNYRHSETGTTALMVTAGQGFLTQMEQLLHMGADVNIKASNGWTAADFAKHF
HQSESLELLKSFLEVCSPDGSPVEQQVTVESSNKEEELLKLYHQSFDDELVDLDLIMDLL
HYICSTSSDGAILIFLPGYDEIVAMRDRILYNDSRFSVQAERYQLFILHSEMQTLDQKKA
LKTPPSGVRKIILSTNIAETSITISDVVFVIDSGKVKEKSYDTLSRVSMLKTIWISKASV
LQRKGRAGRCKPGYCFHLFSRLRFDNMLEFQVPQLLRMPLQELCLQTKLLAPASCQVAEF
LAKAPQPPPAHAIKNALQILKSIDAMEQHEDLTDLGFHLADLPVEPHLGKMVLCAVVLKC
LDPILTIACTLAYRDPFILPAEGSKKKAALHCRKHFASSSFSDHMALLRAFQAWQKARSD
GWERAFCEKYFLSQATMNMILGMRTQLLGQLRAIGFVRAHGGSDIRDVNQNSENWAVVKA
ALVAGMYPNLAHVDQETALLSSSRKKKLHFHPTSVLNQSQLKEGNPAKTPQKYPTEWLVY
DEMSRGHRMVIIRCCSMVTPITAAIFAGCAKLPFPALQEAAEPRSAGTQLDGTSDSDSDT
EDQIDFKINDWLIFQMDRNAARLVYEMRHKWQNLFIKKMRFPSKPWSQQDEAIIHAVVSV
LAAEEHAAGLQQPTGIGQRPRPMAMEEDHSSAKSSKSTPHLPAAAPSYSPLRDSSGKMPA
ASGQVQWKPGNREEPPQPLDQFVPKPVCPPSFSSAHYFIMKSSNIGSIKISQQRGIWSTT
PSNETKLSKAFTDDHLIILIFSVQGSGHFQGYARMTSVISQESCQDWDFLGLGGVFSVEW
IQKESLPFHCTQHILNPWNDNKKVQISRDGQELEPQAAAQLLSLWDRNSVKQVE
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgctgttgcatctgcaaaaaagccaggcaagagccagaagggacggctccgt
tccatcccaaatgccctcaggaaaattcacatcgatgaagaggtcaagatagcactgaac
ctctctttagaaaggttttattacagtgaccagaaagtgatggaatttccctcctcgttg
tccagtaatgagagggctttccttcatcgagcggcacagtctctgggttacagttctaag
agcaaagggaagggaccaaatcgcttcctcactgtcacaaagaaggatggtccagacaaa
cctcagcacagcatgctcctcaatccatcccataatacattatttgtcatccacaacctg
ctggaacggtttcccatcagtaataaggaacgtgtggacatgcagcttagcaccagaagt
gcggcttctttggtgtcagaggctgaaaatgccttggacaaaaacaaggccagcgggcgg
ctaaacaaaggcatacctgtggtgcctccacagaggggttcctccgaacatgacgctttt
cgatgctccctgcctgtacaggaacacaagcaggaaatcatcaaactcatcagagaaaac
agggtggtgctggtggttggagcaactggctctgggaagactacccagatcccacagttc
ctgctggatgaatgtcacaagaaccatgagccctgtaggattttctgcactcagcccagg
cgcctggctaccatcacagttgctgacagggtagcagcagaaagaggagagaatgttggc
aaaactgtaggttatcacatcagacttgagagcagggtctctcccaagacggtgctgacc
ttctgcaccagcggagtgttcctcagaacgctgatggctggagatgctagcctgacaact
gtcacacatgtgattgtggatgaggtgcatgaacgtgatggcttgactgacttcttgctc
acaaaactgcgagatgtgcttccgaagtttccctcactgaaactgatcctctgcagtgca
gctctagacacagaacttttccgtcagtactttggctcctgtcctgtcatcaatctcaaa
ggaagactgtttgatgtgaaggaattctttttggaggacattctgaagctgactggcttt
aaaaagaaggagatgatgaatcacaatgccgaggcacatgaacccaagaataagcagaaa
agtttgacagagtggtgtgagacactgaagaacacttctgttgaagaggaagaagggaca
tcggtgctgagttgtgtccctgaggacagcagtgtcttggatggagaggacggtgccctc
aacagtctgcctgagaacaatccggaacagttggaaccatggctggtgagagaaatggat
tcctgcatttccaacattttcctgaatgaagaccaggatgcttttattcagcttttcaac
ctcatcctctatgaaaacatgaatgtgaactacaggcacagtgaaacagggaccacagct
ctgatggtgacagcaggtcaaggctttctcactcagatggagcagctgcttcacatgggt
gctgatgtcaacataaaggcttctaatggatggacggccgcagactttgctaaacacttc
catcagagtgaatccctggagctgctcaaatcttttctagaggtatgcagtcctgatggg
tccccagtggagcagcaggtcactgtagagagcagcaataaagaggaggaactgctgaaa
ctctaccaccagagctttgatgatgaactggttgacctggaccttatcatggaccttctc
cattacatctgctccaccagcagtgatggtgccatcttaatttttcttcctggatatgat
gaaatagtggcgatgagggatcgaatcctttataatgacagcagattctctgttcaggct
gagaggtaccagctgttcatcctgcattctgaaatgcagactctggaccagaagaaggcc
ttgaagacccccccaagtggtgttagaaaaataattctttctaccaacatcgctgagacc
agtatcacaatcagtgatgtggtctttgtcattgattcagggaaggtcaaagagaaatcc
tacgacactctcagtcgtgtttccatgttaaagacaatttggatttctaaagctagcgtc
ctgcagaggaagggaagggctgggcgttgtaaaccagggtactgcttccacctcttcagt
cgcctcaggtttgacaacatgctggaattccaggttccacagcttctgcgtatgcctctg
caggaactgtgtctgcagaccaaactactggccccagcttcctgtcaggtagctgagttc
ttggctaaagctcctcagcctcctccagcacacgcaatcaagaacgctctacagatactg
aagtcaatagatgctatggagcaacatgaagacctgactgatcttggcttccacctggct
gaccttcctgtggagccccacctgggcaagatggtgttgtgtgctgtggttcttaagtgt
ctggacccaattctaaccattgcctgcaccctggcctatcgtgaccccttcatccttcct
gctgagggctctaaaaaaaaggcagctctgcactgtcgcaaacattttgcgtctagtagt
tttagtgaccacatggctctgctgagagcgtttcaggcatggcagaaagctcgcagcgat
ggctgggaaagagcattttgtgagaaatacttcctgtcccaggccaccatgaatatgatc
cttggcatgaggactcagctgttgggccagctccgggcgattggtttcgtgcgggctcac
gggggcagtgatatccgtgacgtcaatcagaattccgagaactgggctgtagtgaaagca
gcactggtggctgggatgtatccaaacttggcccacgtggatcaagaaactgccctgctt
tccagcagcaggaagaagaagttgcattttcaccccacatccgttctgaaccagtcccag
ctcaaagagggcaaccctgccaagacaccccagaagtatcccacagagtggctggtgtac
gatgagatgagtagaggccaccgaatggtcatcatccgctgttgctcgatggtcactccc
atcactgccgccatatttgccggttgtgcaaaactgccctttcctgccctccaagaagca
gctgagccaagatctgctgggacgcagctggacggcaccagtgacagtgacagtgacaca
gaggaccagattgattttaagatcaacgattggctcattttccagatggacagaaatgct
gctcggctggtctatgaaatgagacataagtggcaaaacctgttcatcaagaagatgcgt
tttccatccaagccatggtcccaacaagatgaggccatcatccacgctgtggtttctgtc
ctcgcagcagaagagcatgctgcaggtctgcagcagcctacaggcattggccagagaccc
cggcccatggcaatggaagaagaccactcgtctgcaaagagctcaaagagcaccccccac
ctaccggctgctgctccgagctactcaccactacgggacagttctgggaagatgccagca
gcttcaggccaggttcagtggaagcctgggaaccgagaagagcctccccagcccttagac
cagtttgtcccaaagccagtttgtccaccaagcttttcatcagcgcactacttcatcatg
aaaagtagcaacattgggagtattaaaatatcccagcagaggggcatctggtccacaaca
ccaagtaatgagaccaagctctccaaggccttcacggatgaccacctcatcatccttatc
ttctctgtccagggttcaggtcacttccagggttacgctcgcatgacgtctgtcatcagc
caggagagctgccaggactgggatttcctgggtttaggaggagtcttcagcgttgagtgg
atccagaaggagagtcttccttttcactgcacccagcatatcctgaacccgtggaatgac
aacaagaaggtccagatcagcagggacggacaggaattggagcctcaggcagctgctcag
ctcttgtctctgtgggacagaaactctgtgaagcaggtggaataa
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