Takifugu flavidus (sansaifugu): 130516873
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Entry
130516873 CDS
T09160
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfs03021
]
130516873 (taf1c)
Transcription machinery [BR:
tfs03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
130516873 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
130516873
NCBI-ProteinID:
XP_056874226
LinkDB
All DBs
Position
20:complement(11457385..11465222)
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AA seq
1053 aa
AA seq
DB search
MDYQFPSQLFPGFYNRGPPDSVSQHRAGSWGGYDRVTPVGGAGDLSSWTFTARHQVKGEV
WSPTEPAPVPLLSPKHSVLWPSTPPDPMDFVDHMQNFYSDHYQDAFGCMSEILGHDFNFE
SKKCKLYSANMQKMKRFVDMMKFKKCELAYSSKVMDSYATMLTDVMHTIPPQLLGSLLHE
ELTGQRDRMLVSEEATGGALAFVPFSHSGSGSQHGCLIYPRRGLHLLNFHTVALQHQREG
PSCVDAKSHPPFSFQLRGPVRQISTASLFNHCCVAVRSDHLCGVWRFAETVKPRLLQAIN
TTEVATCISVSPHILGEVLVASERGAAVLWTVGRGIQKIREDEDNLYFNAKSSWRWCEFS
AHPRVILYADRTGVELTDIREKSATTHTLFHISNTSECRSGERLFLSRYLGEVHPFHHLI
TTQYSAYVVDERFAAMPMIKLDHVMQLPPIFCEIVPGCDASISSGGESRTTKILLGSHRS
QEITMLQYSGGRAEASLSQGPPRSLHRPQDSLKHLPVQIPHRLVTAKSRLSSPALGLTCM
HKTGRAEECICVLQLTEAGDIFYQILQPEASVGEELLPQACESHPPPAELLVHGPPQMQQ
GASNMDSHYSSESGPPLVQNDEADAVCDADDGNVRTVLTATTETPQSVKGNIGDKSVAKL
SSGSLFTWKRWLQKLMRRSHRTKFGPHTLQHMLVSTKGLLHHSAEELMDPSEEQCVERLW
QDLTKCMSERSLLVGSTVSASLSPPEVVPLPNVVETDTWTDDLSNRLTVSWQGEDAWHSW
WKEKLGLDREQKVEALKRKRRREKEARRASGHHPKLSDSFSSSASCLSEWDNFSDSTSWF
STASQATWSDSDTGSTQRSQDLPRAATQSTAPTGSPVPTLTATSHVKNKQNTLKSPSSSC
PLLGSQTPTENFTQARQRTRHTLDSYLSSQDDENHFQEVGHIIQSQSNVPSFQFQSSQPF
SQSRARVDLSPEQPRLSQSQDRPALSQFQHRPALSQSQSQSQDRPALSQSQDRPALSQSQ
SQDRPRLSQSQSSQSRLGISQSSQPKKKSRMGF
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggattaccagtttccatcgcagctttttcctgggttttacaaccgcggtcctccggac
tccgtctcccaacaccgcgctgggagctggggcggctacgaccgagtcacacctgtgggt
ggcgctggtgatctctccagctggaccttcacagctcggcaccaggtcaaaggggaggta
tggagtcccacagaaccagcaccagtgcccctcctgtctccaaaacactctgtcttatgg
ccttcaacccctccagacccaatggactttgtggatcatatgcagaacttctacagcgac
cattaccaggacgcctttggctgcatgagtgaaattctgggccacgacttcaactttgaa
tcaaaaaaatgtaagttatattcagccaacatgcagaaaatgaaaaggttcgtggacatg
atgaaattcaaaaaatgtgagctggcatattcctcgaaagtgatggattcatacgccaca
atgttgacagacgttatgcacacaatccctcctcagctgcttggttccctgttgcacgag
gagctgacggggcagagggaccgcatgctcgtttctgaagaagccacaggcggtgcacta
gcttttgtccccttttcacatagtggcagcggctctcagcatggctgtctcatctaccct
agaagaggactgcacttgctcaacttccacacagtggcgctgcagcaccagagagaaggc
ccctcatgtgtggacgccaagagccaccctcccttcagtttccagctgagaggccctgtg
agacagatcagcactgcctccctgttcaatcattgctgtgttgctgttcggtcggatcac
ctgtgtggagtttggaggttcgctgagactgtcaaacctcggcttctccaggccatcaac
acgacagaagtggcgacatgcatcagtgtcagtcctcacattttaggtgaagttctggtg
gcgagtgagagaggagcagcggtattgtggaccgtcggcagagggatacagaaaatccgt
gaagatgaagataacctgtacttcaatgcaaagtcgtcatggcgatggtgcgagttctct
gcccacccacgagtcatactatatgctgacaggacaggagtggagctcacagacatcagg
gaaaaatctgcaaccactcacactctgtttcatatcagcaacacctcagagtgccgcagc
ggcgagcgtctgtttctgtccagatacttaggagaagtccacccctttcaccatctgatc
accacccagtactctgcctatgtcgtagacgagcgctttgctgcaatgccgatgatcaag
ttggatcatgtgatgcagttgccgcccatattttgtgaaattgttccaggttgcgatgcc
tccatctcatcagggggtgaatcaaggaccacaaagatcctgctgggctcccaccgttct
caggagatcacgatgcttcagtattctggaggcagagcagaagccagtttgagtcaagga
cctcctcgatctctgcacagaccccaagacagtctgaaacaccttcctgtccagatccct
catcgtctggttactgcaaaatccaggttgtcctcacctgctttaggtctcacttgtatg
cacaagacgggaagagcagaggaatgtatctgtgtcttacagctgacagaggcaggggat
attttctaccagatcctgcagccggaggcctcagtaggagaggaactattaccacaagca
tgtgaaagccatcctcccccagcagagttactggtccatggacccccacagatgcaacaa
ggagcctccaatatggactctcattactcctctgagtctgggccaccattagttcagaat
gatgaggctgatgctgtgtgtgatgcagatgatggaaacgttcgcacggttctcacggcc
acaactgagaccccccagagcgtgaagggaaatatcggtgacaagtctgtggcaaagctc
agcagcggcagcctcttcacgtggaaacgttggttacagaagctgatgcgacggagtcac
agaactaaatttggtcctcacactttgcagcacatgctggtgagcaccaaaggcctcctc
caccattctgctgaggaattaatggatccatcagaagagcagtgtgtggagaggctgtgg
caggacctgaccaagtgcatgtctgagcgctccctgctggtcggcagcactgtctcagct
tccctcagccctcctgaggtggtccccctgccaaatgtggtggaaacggacacatggaca
gatgatctcagcaaccgcttgactgtgtcctggcagggggaggacgcctggcactcctgg
tggaaagagaagctggggctggacagggagcagaaggtggaggctctcaagaggaaacgg
aggagggagaaggaagcaaggagagccagcggccatcatccaaagctgtctgatagtttc
tcatcatctgccagctgcctgtcagagtgggacaacttctctgacagcaccagctggttt
tcaactgcaagtcaagcgacatggtcagactcagacaccggcagtactcagaggtctcag
gacctaccaagagccgccacacaatccacagcgccaacaggaagtcctgttcccacgctg
acagccacatcacatgtgaagaataaacaaaacaccctgaagagtccaagcagttcctgc
cccctcctcgggtcccagacaccaacagaaaatttcactcaggctagacaaagaacaaga
catacgcttgattcctacctcagctctcaggatgatgaaaatcactttcaggaagttgga
catatcatacaatcccaatctaatgtcccttcctttcagttccaaagttcccagccgttc
tctcagagcagggccagggtggatctgtccccggagcagcctagactgtcccagtcccag
gaccggcctgcactgtcccagttccagcaccggcctgcactgtcccagtcccagtcccag
tcccaggaccggcctgcactgtcccagtcccaggaccgacctgcactgtcccagtcccag
tcccaggaccgacctagactgtcccagtcccagagttcccagagtcgcctggggatatca
cagtcatcgcagcctaagaagaagtcccgaatgggattttaa
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