Takifugu flavidus (sansaifugu): 130517057
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Entry
130517057 CDS
T09160
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tfs03009
]
130517057 (ddx55)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130517057 (ddx55)
Ribosome biogenesis [BR:
tfs03009
]
Eukaryotic type
Pre-60S particles
Helicases
130517057 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Cas3-like_C_2
SBF_like
Helicase_C_2
YbjM
RPN2_C
Motif
Other DBs
NCBI-GeneID:
130517057
NCBI-ProteinID:
XP_056874629
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All DBs
Position
20:2894821..2898871
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AA seq
597 aa
AA seq
DB search
MDNTTDGTWDSLPVKLNDGILETLNELQFTHMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPIIELLLKREEKLKKMQVGALVITPTRELALQISEVMQQFIQKFPQFTQILLIGG
SNPIEDVEKFKDQGANIVIATPGRLEDMFKRKADGLDLACLVKSLEVLVLDEADRLLDMG
FEASLNAILGHLPKQRRTGLFSATQTQELEKLVRAGLRNPVRIAVKEKGVAASATQKTPS
RLSNYYTICRSEDKFNNLVAFLRQHKHEKNLVFFSTCACVEYFGRALETLIKKATVCCIH
GKMKDKRNKIFADFRALKSGILVCTDVMARGIDIPDVDWVLQYDPPSSASAFVHRCGRTA
RIGNQGNALVFLLPMEESYVNFLSINQKCPLQKMPPINDVVDVLPKVKAMSLADRATFDR
SMRAFVSYVQAYAKHECSLIFRVKDLDFGSLARAFALLRLPKMPELKGKTFPDFVETTVD
TETIRYKDKNREKQRQKMLAELKTKEKIQFSKNHVKKEAWSKQKSKKERRQKRATKRSRH
EGSEIDEEDLEELLNDTRLLKKLKKGQISAEDFDKQIATEQKNKEKPAGPSHEDEDV
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggataataccaccgatggaacgtgggacagtttacccgttaaactaaatgacgggatt
ttagaaacgctcaatgagctccaatttacacacatgacacctgtacagtctgcctgtatt
ccgctgtttatgagtaataaagatgttgctgctgaagcggtaacaggtagcggaaaaaca
cttgcgtttgtcattccaatcatagagctgctcctgaagcgagaggaaaagttgaagaag
atgcaggttggtgcccttgtgatcacacccacaagagaattggcacttcagatcagtgag
gtgatgcagcagttcatccaaaagttcccgcagtttacgcagattttactgatcggtggc
agtaatccaatagaggatgtggaaaagttcaaggatcaaggagccaacattgtaattgct
actccaggacgtctggaggatatgtttaagaggaaagcggacggtctggacttggcctgt
ttggtgaaaagcctggaagtgctggttcttgatgaagctgataggcttcttgatatgggg
ttcgaggccagtctgaacgccatcttgggccacctgcctaagcagagacggaccggcttg
ttttcagccactcagacgcaggaattggagaaattggtgagagccggtctgaggaatccg
gtccgaatcgctgtaaaagagaagggtgtggctgcctctgccacccagaaaacaccctcc
agactctccaactactacaccatctgtaggtcagaggacaaattcaacaacctggtggca
tttctgaggcaacacaaacatgagaagaacctggtgttcttcagcacgtgcgcgtgtgtg
gaatatttcggtcgagcgcttgagaccctgataaagaaggctaccgtctgctgcatccac
ggcaagatgaaagacaaacgcaacaagatcttcgctgactttcgggccctgaaaagtggg
atcctggtgtgcacagatgtgatggccagaggcatcgacatacctgatgttgactgggtg
ctgcagtacgaccctccgagcagtgccagtgccttcgttcatcgatgtggacgtacagcg
cgcattggtaatcagggtaatgctctcgtctttctactccccatggaggaatcttacgtc
aattttttgtccattaaccagaaatgccctcttcagaagatgcctccgattaatgacgtg
gtggacgtgctgcctaaagtcaaggccatgtctctggctgatcgggccacatttgacaga
agcatgagagccttcgtctcatacgtgcaggcatatgcaaaacacgagtgtagtctcatc
ttcagagtcaaagatctggactttggctccttggcccgggcttttgccctcctccgcctg
ccaaagatgcctgaactcaaggggaaaacgttccctgattttgtggagacgacggtagac
acagaaaccatccgctacaaggacaagaacagagagaaacagcgacagaagatgctggca
gagctgaaaacaaaggaaaaaattcagttttccaagaaccacgtcaagaaggaagcctgg
tccaaacaaaagtccaagaaggaacgaagacaaaagagggcaacaaagaggagtcgtcat
gagggctccgaaatagacgaggaggacctggaagagcttctaaatgacacccgcctcctt
aaaaagctgaagaagggacaaatcagcgccgaggactttgacaaacagatcgcaactgag
cagaagaataaagaaaaaccagccggaccgtcacacgaggacgaagatgtatga
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