Takifugu flavidus (sansaifugu): 130517283
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Entry
130517283 CDS
T09160
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130517283 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130517283 (prpf4)
Spliceosome [BR:
tfs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
130517283 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
130517283
NCBI-ProteinID:
XP_056875045
LinkDB
All DBs
Position
20:6500566..6504362
Genome browser
AA seq
509 aa
AA seq
DB search
MSDDEDFAPVVKRSRLFYGSLEEKERERLRSEATSGSTGSSAVKVGIEAGHINISSGETL
ELEERVSERQQEALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERL
RTVLSVVGPDALKKSRRDEERAKRAHEECQQTWYHEGTASLKEARIWLAKYSLPRAVKRL
ETARGQKDLVEATKVVRQQELHKSLRNLNNFCSQIGDSRPISFCHFSPDSKMLATASWSG
LCKLWSVPDCSLIRTLRGHNTNVGAVVFRPQAGISLDHSDVNLASCAADGSVKLWSLDSD
EPVADIEGHTERVSRVTWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDIHF
HPDGSLAATGGLDSFGRVWDLRTGRCVVFLEGHLKELYSVNFSPNGYHLATGSGDNSCKV
WELRNRKCLYTIPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEG
KVMGIDVSPDGKLIATSSYDRTFKLWVSE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgaggattttgctccggtggttaaaaggagtcggcttttctacggaagc
ctggaggagaaggagcgagagcggctgagatccgaggcgacaagtggttcaacaggaagc
agtgcagtaaaggttggcattgaggccggacatatcaacatttcttcaggggagactctg
gaattggaagagcgtgtcagcgaaaggcagcaggaagcgctcgctgccttcgagcgtcgt
cgaagagccaggcagataaccgtctctacagatgatgccgaggtgaaagctgggctccga
gcacttggagagccaatcacattgtttggagagggcccggctgaccggcgggagagattg
cgaaccgttctgtctgtcgttgggcctgatgctctgaagaagtcaaggagagatgaagag
agagccaaacgggcccacgaagagtgccaacagacatggtaccacgaaggcaccgcctct
ctgaaggaagctcggatctggctggccaaatactctctgccacgggctgtgaagcggctg
gagactgcgcgaggtcagaaagacctcgtcgaggcaaccaaggttgtccgacaacaagaa
cttcacaaaagtctgaggaatctaaacaacttttgcagtcagatcggtgattctcgacca
atcagcttctgccacttcagcccagactccaagatgctggccacggcctcctggagtggt
ctgtgtaagctgtggtctgtccctgactgcagcctgatccgtacactcagaggacacaac
accaacgtgggagccgttgtcttccgtccacaggccggaatctccctcgaccactcggac
gtcaacctggcatcatgtgctgctgatggatcggtgaagctctggagcctcgacagcgac
gagccggtggcagatattgagggacacactgaacgagtgtcacgagtgacctggcatcct
tccgggagatttttgggaacgacctgttacgacaattcctggcgtttgtgggacctggag
gttcaagaggagatcctccatcaggaaggtcacagtaaaggagtccatgatatccacttc
caccccgacggatctctggctgccactggagggctggattcctttggccgtgtttgggat
cttcggacaggacgttgtgtggttttcctggagggacacctgaaggagctttacagtgtg
aacttctcccccaacgggtatcacctggcaaccggaagcggcgataactcctgtaaggtt
tgggagttgaggaacaggaagtgtctttacacgatccccgcccaccagaaccttctgtct
gccgtccgcttccagcccacagacggacacttcctgttgactggagcatatgacaacacg
gcaaaggtttggagtcacccgggctggacgccgttgaagacgctggcaggacacgagggg
aaggtgatgggcattgacgtgtcccccgatggaaagctgatcgccaccagctcctatgac
cgaacctttaaactctgggtctccgagtga
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integrated database retrieval system
