Takifugu flavidus (sansaifugu): 130517591
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Entry
130517591 CDS
T09160
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130517591 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130517591 (mtrex)
03041 Spliceosome [BR:
tfs03041
]
130517591 (mtrex)
03009 Ribosome biogenesis [BR:
tfs03009
]
130517591 (mtrex)
03016 Transfer RNA biogenesis [BR:
tfs03016
]
130517591 (mtrex)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130517591 (mtrex)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130517591 (mtrex)
Spliceosome [BR:
tfs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130517591 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
130517591 (mtrex)
Ribosome biogenesis [BR:
tfs03009
]
Eukaryotic type
Pre-60S particles
Helicases
130517591 (mtrex)
Transfer RNA biogenesis [BR:
tfs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130517591 (mtrex)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
130517591
NCBI-ProteinID:
XP_056875548
LinkDB
All DBs
Position
20:5550160..5561520
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDNLFSVFDDDEQTSTGKNVPASLTTDIGKAVGKDGPDVDPGPSLRGKRKADSDG
GEEVFAKKSQLISANELNLAEFMPQVKVEPVETVEGCTHEVALPVNDQYKPLKPRVGKAA
KEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDE
IHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRP
TPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGASGGGKWDPRGRKGG
TKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNKDDEKRLVEEVFNNA
VDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIKK
YEEQYHTIEIPNQESVVTYFKIRQQLAKLGKEIQEFIHRPKYCLPFLQPGRLVKVKNEDA
DFGWGVVVNFNKKTNVKSSTDAEPLYVVEVLLHCSKESVKDSATEAAKPAAPGEVGEMQV
VPVMVQLLSALSSVRLYIPKDLKPLDNRQLMLKSIQEVQKRFPDGIPLLDPVDDMGIKDQ
ALKKIIQKVEAFEHRMYSHPLHSDPNLESVYALCEKKALIGADIRASKRELKKAQTVLQM
DQLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMIFNGLFNDLTVEQATAL
LSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLDVDEETYLNQFKPHLMD
VVYAWANGSTFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagataatttgttcagcgtgtttgacgatgatgaacaaacgtct
acgggtaaaaacgtccccgcttccttaacaacagatatcgggaaagctgttggtaaagat
ggaccagacgtggaccctggtccgtctctccgaggcaagaggaaggcagacagtgatggt
ggagaggaggtgtttgcgaaaaagtctcagcttatatcagccaatgaacttaatcttgca
gaatttatgccccaagtgaaggtggaaccagtggaaactgtggaaggctgcactcacgag
gttgctcttcctgtcaacgaccagtataaaccactaaaaccacgagtggggaaggcagcc
aaggaatatccgtttattctcgaccccttccagcgggaggccattttgtgtattgataac
aatgagtctgtccttgtgtctgcgcacacttctgctggcaaaaccgtgtgtgctgagtat
gccattgcattggcactcagagagaaacagagagtgattttcaccagtcccatcaaggcc
ctctccaaccagaaatacagggagatgtatgaggaattccaagacgtggggctgatgact
ggtgacgtcaccatcaaccccactgcctcctgccttgtcatgacaacagagatcctgagg
agtatgctgtaccgaggctctgaaatcatgagggaggtggcatgggtcatctttgatgaa
atccattacatgagagatgcagagagaggcgttgtatgggaggagaccatcattcttctt
cctgataatgtgcattacgttttcctgtcagccactatccccaacgccaggcagttcgct
gagtggatttgtcaccttcataaacagccgtgccatgtcgtctacaccgactaccgtccc
acaccactgcaacactacatattcccagcagggggcgacggactccacttggttgttgat
gagaatggagatttcagagaggacaattttaacacagccatgcaggtacttagagatgcc
ggagattctgggggagccagcggaggtgggaagtgggaccccagagggcggaaaggaggc
actaaaggcccatctagcgtgttcaagatcgtaaagatgatcatggagaggaatttccag
ccagttatcatcttcagcttcagcaagaaagaatgtgaagcctatgctctacaggtggcc
aaattagattttaacaaagatgatgagaagcgtttggtggaggaggtgttcaacaacgca
gtggactgtctctctgatgaagataagaaactccctcaggtggagcacgtgctgccgctc
ctgaagagggggatcgggatccatcacggaggtttgctgcccatcctgaaggagaccata
gagatccttttctccgaaggcctgctaaaggctttatttgctaccgagaccttcgccatg
ggcatcaacatgccagcccgcactgtgctcttcaccagcgctcgcaagtttgatggcaag
agtcaccgctttatcacgtcaggcgaatacatccagatgtccgggcgagctgggaggaga
ggaatggacgacaggggcattgttatctttatggtggatgagaagatgagtccagctgtg
ggaaagcagctgctcaagggctcggccgatcctttaaacagcgcgtttcacctcacctac
aacatggtgctcaacctgctgcgagtcgaagagatcaaccccgagtacatgctggagaag
tccttctatcagtttcagcactacagggccctccccggcgtggtggagaaaataaagaag
tacgaagagcaataccacaccattgagattcccaaccaggagagcgtggtcacctacttt
aaaatccgacagcagttggccaaactcggtaaagagatccaggagttcatccacaggccc
aagtactgtctgcccttcctgcagccagggcgccttgtgaaggtgaagaatgaagacgcc
gacttcggctggggggtcgtcgtcaacttcaacaagaagactaacgtgaagagcagcacc
gacgcggagccgctgtacgtggtggaggttctgctccactgcagtaaggagagcgtcaaa
gactctgcgaccgaggcggcgaaacccgccgccccgggagaggtgggagagatgcaggtt
gtcccggtgatggtgcaactcctgagcgccctcagctcggttcgcctttacatccctaaa
gacttgaagcctctggacaaccggcagctgatgctcaagtctatccaggaggtgcagaaa
cgtttcccagacgggattcccctgctggaccccgtggacgacatgggcatcaaagaccag
gccctgaagaaaatcatccagaaggtggaggcctttgagcaccgcatgtactcgcacccc
ctgcacagcgatcccaacctggaatccgtctacgctctctgtgagaagaaagcgctgatc
ggagcagatattcgggcatccaagcgggagctgaagaaggctcaaaccgtcctgcagatg
gaccagctcaagtgcaggaagagggtcctgaggcgtctgggattcgccagcccctccgac
gtcatcgagatgaagggacgggtggcctgtgaaatcagcagcggcgacgagctcctgctg
acggagatgattttcaacggcctcttcaacgacctgacggtggagcaggccaccgccctg
ctgtcctgcttcgtcttccaggaaaacgccagcgagatgccgaaactgacggaacaactg
gctgcacctttgaggcagatgcaggagtgtgcgaagcgcatcgccaaagtctcggcagac
gccaagctggacgtggacgaggagacgtatttgaaccagttcaagcctcacctgatggac
gtggtttacgcctgggccaacggctccacgttcgcacagatctgcaagatgacggatgtt
ttcgaagggagcatcatccgctgcatgcgccgtctggaggaggtgttgcgacagatgtgc
tctgcagcaaaggccattggcaacacggagctggagaacaagtttgccgaaggaattacc
aaaatcaagagagacatcgtatttgctgccagcctctacctgtag
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