Takifugu flavidus (sansaifugu): 130517919
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Entry
130517919 CDS
T09160
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130517919 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130517919 (ddx61)
03036 Chromosome and associated proteins [BR:
tfs03036
]
130517919 (ddx61)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130517919 (ddx61)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130517919 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
130517919 (ddx61)
Chromosome and associated proteins [BR:
tfs03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130517919 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
130517919
NCBI-ProteinID:
XP_056876105
LinkDB
All DBs
Position
21:complement(10406260..10415064)
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AA seq
489 aa
AA seq
DB search
MATTRTETVGPVILGLNKQNGQLRGQTKPVSVQSASAAPGKALAPSQTAGGGPQDGGGIK
FGDDWKRNLKLPPKDHRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDHIQAMVLVPTRELALQVSQISIQI
AKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVHIMVMDE
ADKLLSQDFVVLVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKTIEEQLITDIKPIPGSIDKSLYVAEFHCSSADCEVEEVEE
KPGHQKDSP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaccagaacagaaactgttggcccagttatcctgggactgaacaagcagaac
ggacaactcagaggacagacgaaaccggtgtcagtccagtctgcttcagcagctccagga
aaggctttggctccatctcagactgcaggtggaggcccccaggatggaggaggcatcaag
tttggagatgactggaaaagaaatctcaagctcccccccaaagaccacagagtcagaacc
tctgatgtgacatctacgaaggggaatgaatttgaagattactgcctcaaaagagaactt
ctcatgggcatatttgagatgggttgggagaaaccatctcccatccaggaggagagcatt
cctatcgccttgtctggaagagacattctggctcgtgcaaagaatggaacaggcaagagt
ggagcctatctcatcccgatgttggagaggatagacttgaaaaaggaccacatacaggca
atggttttggttcccacacgtgagttggctctacaggtcagccagatctccatccaaatc
gctaagcacctgggaggagtcaaagtcatggccactacggggggcacgaacctgcgagat
gacatcatgcgtctggatgagactgtgcacgtggtcatcgctacaccaggaaggatcctg
gacctgattaagaagggggtggcgaaggtggatagagtccacatcatggtgatggatgag
gcggataagcttttatctcaggattttgtggtgctcgttgaggatatcattagcttcctg
gccaagaacagacagatccttctctactctgctaccttcccaatcagcgtgcagaagttc
atggccaagcacctccaaaagccctatgagataaacctgatggaggaactgacgttgaag
ggcatcactcagtactacgcctatgtcacagagaggcagaaggtccactgcctcaatacg
ctcttctccaggcttcagatcaatcagtcaattatcttctgcaactccacccagagggtg
gagctcctggccaagaagatcacccagctgggctactcctgcttctacattcatgccaag
atgatgcaggaatatagaaaccgagtgtttcatgactttagaaatggcctgtgcagaaac
ctggtgtgtaccgatctcttcaccagaggtattgatatccaggcggtcaacgtggtcatt
aattttgatttccccaagaatgctgagacttacctccaccgtattggaagatcagggagg
tttggtcatctggggttggcgatcaatctcatcacatcagaggacagattcaacctgaag
accatcgaggaacagctgatcaccgacatcaagcccattccaggcagcatcgataagagc
ctgtatgtggctgagttccattgctccagcgcagactgtgaggtggaggaagttgaggag
aaaccaggacaccaaaaggacagcccataa
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