Takifugu flavidus (sansaifugu): 130518310
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Entry
130518310 CDS
T09160
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
tfs
Takifugu flavidus (sansaifugu)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
130518310
NCBI-ProteinID:
XP_056876768
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All DBs
Position
21:5382724..5412706
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AA seq
1622 aa
AA seq
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MEYRLGFRLSLVVVILVLTLSRERVEAQRAGCKNVQYDLAFILDTSSSVGKDNFEKIRQW
VANLVDSFDVASDKTRVAVVRYSDRPTTEFNLARYRTLEEVKRAARNIRYLGGNTMTGDA
ISYTTSNIFTERNGARPTARGIQRVAILLTDGRSQDYVLEPSKAAAKAGIRMFAVGIGEA
LKVELEEIAAEPKSAHVFHVTDFNAIDKIRGRLRKRLCENVLCPNMKVRPGRFKPDSSSH
GLEEVPGFDLMAYFSVKEILGTREDDGQSSYVRLGTVPIVQQTEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQVFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIGLSVEAKSVSLFLDCKHIQTLPIEEREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELETCCDLPNGPCPKKVVTEAPPVQIPTPTPTVGEQKRGPQANCSCSA
GVKGDTGAPGVAGPKGEKGDTGSKGAVGPPGIRGEKGESGSFNSVRGDRGEKGESGSVGL
PGPPGQKGEKGVGGIPGIDGLPGDKGDIGETGVAGAPGPPGIAGLKGIQGEAGIPGMPGP
RGVPGDAGIKGDKGTSGARGESGLDGSPGKPGLPGKDGLRGLAGVPGPTGIKGEKGERGL
PGLPGDVVQREGLRGEKGLPGPPGPPGAIGPPGPPGPQGLQGFPGKPGEFGHKGKKGENG
LPGVDGLPGTAGPQGPPGPPGNQGHPGPPGLPGEIGFAGKPGEAGKPGLPGKDGLDGLPG
NDGAMGPRGERGADGFPGKAGIKGDEGPPGPRGPPGERGVAGPPGQAGVDGVRGGQGVPG
ERGAGGPVGPKGEKGDKGDVGQRGPPGIPGDVANVIPEPGMPGKPGEKGEKGEQGKPGEM
GQRGLPGEQGFKGLPGPVGPKGDSGPTGDPGRVGDPGPPGAAGSPGPRGAAGDAGLPGII
GPPGPAGQRGDKGDPGKPGQAGPTGPPGEPGVIGPPGPPGKGKDGQSGEPGPQGVQGPPG
PKGPPGARGDLGPPGERGSPGEGKVGPVGPPGQSGEPGAAGMTGPPGVAGPQGPPGHNGL
PGRPGEKGSPGEPGKPVDISDLNLKDVCSDCPAGPPGPPGQPGVPGDKGHPGLAGKNGQD
GYQGQPGPAGPQGPPGADGAKGGKGDQGPPGGPGDKGDKGHPGPPGHPGTPGLMGTPGTD
GQPGPVGPPGPPGEKGKEGLKGIQGPAGLPGLIGPPGKTGKDGRSGEPGDQGKQGEPGLP
GNPGLRGLPGFKGHRGEPGAPGVKGEDGKSGSPGRDGKHGKDGPRGSPGPEGLLGPRGEP
GKQGEPGPSGKAGLPGTPGLRGEKGEAGSPGLPGFSGPKGPTGPPGPAGPEGKQGIPGRV
GDRGIKGDKGDPGTKGDKGHSGDPGMPGNPGVPGRKGHTGMMGMPGQPGEIGAPGAQGPV
GNPGIPGQRGESVSLEEMRRLIQEELAKQLDAKMAYLMAQIQPAHVKSTAGRPGPPGPPG
KDGSSGRPGPPGEPGMPGMNGGEGPRGPMGPKGEKGGKGEKGEPGIGDRGEPGPVGPIGP
AGIPGYGKDGSPGQAGAQGEPGNPGSAGQPGPQGPPGQCDPSQCAYYASLAQRPHTKNVK
GK
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggaatatcgcctgggatttcggctcagcctggtcgtggtcatcctggtcttgactctt
tccagagagagagtagaagcccagagggcaggatgcaagaacgtccaatatgacctggcc
tttatcctggacacctcatccagtgttgggaaagataactttgagaagatcaggcaatgg
gtggccaacctggtcgactctttcgacgtggcgtcggacaagacgagagtggctgttgtt
cgctacagtgacagacccaccaccgagttcaacctggcccggtacaggacgctggaggag
gtgaagcgcgccgctcgcaacatacgctacctgggagggaatacaatgacgggggatgct
atcagctacaccaccagcaacatcttcacagagcggaacggcgcgaggcccacggccaga
ggcattcagagggtggctatccttctgaccgatgggcggagtcaggattacgtcctggag
ccctccaaagcagccgccaaggccggcatcaggatgttcgctgtcggcatcggcgaggcg
ctgaaggtggagctggaggagatcgctgccgagccaaagagcgcgcacgtcttccacgtg
accgactttaatgccattgacaagatcagggggagactgaggaagaggctgtgtgagaat
gtcctgtgtccaaacatgaaggtccgacctggccgcttcaagcccgacagcagcagtcac
ggtctggaggaggtgccagggttcgacctaatggcgtacttcagcgtgaaagagattctg
gggaccagagaggatgatgggcaaagttcttacgttcgcctcggcacagtgcccatcgta
cagcaaaccgaagacgtttttcctcaaggtcttcctgacgaatacgccttcgtcaccacc
tttaagttcaggaaaacctcgaggcgtgaagactggtacctctggcaggtttttgacaaa
tatggaatcccacaggtgtcgatccggctggacggtgagaacaaagcggtggagtacaat
gctgtcgggctgacaaaagacgctgtcagagccgtgttcaagaacccggaagtggacaac
ctgtttgaccgcaactggcacaagattggcctcagcgtggaggccaagtcggtgtcgctg
ttcctggactgcaaacacatccagaccctgccgatcgaagagcgcgaggacatcgacatc
caggggaagacggtgatcgggaagaggctgtacgacagcgtgcccatcgatttcgacctc
cagaggatgatgatctactgcgactccaagcatgcggagctggagacctgctgcgacctc
cccaacggaccttgtcctaagaaagtggtgacagaagcccccccggtgcagataccaacc
ccaacaccaaccgtgggggagcagaagagaggcccccaggcgaactgctcctgctccgca
ggtgtcaagggagataccggagcaccgggtgtagcaggtcctaagggtgaaaagggtgac
actggatctaagggtgctgtaggaccacctggaatcagaggagaaaagggagaatctggc
agcttcaactctgtcagaggtgacagaggtgagaagggtgaatcgggcagcgtagggttg
ccaggtcctcctggacaaaaaggagagaagggcgtcgggggtatcccgggtatcgatggg
ttaccaggagataaaggagatataggtgaaacaggagtggccggtgctccgggaccgcca
ggcatcgctggattaaagggaattcaaggggaggcgggaattcctggcatgcccggaccg
cgaggcgtcccgggtgacgctgggataaaaggtgacaagggaacttctggagccagaggc
gagtcgggcttggatggatcacctggcaaacctggtctccctggaaaagatggtttaagg
ggactggctggtgtacctgggcccactggaatcaaaggcgagaagggagaaaggggcctt
cctggattacctggagatgtggttcagagagaagggttacgtggtgagaagggtcttcct
ggacctcctggtcctccaggagccattggccccccgggtcctcctggtcctcaggggtta
cagggctttccaggtaaacccggagagtttggacacaaggggaaaaagggtgaaaacggg
ttgcctggagtggacggcctccctggaacggctggtcctcagggtccacctgggccacct
ggaaaccaaggtcaccctggacctccaggtctacccggtgaaattggatttgcaggcaaa
cctggagaagctggaaagcctggtcttccaggtaaagatgggttggacggtcttcctggg
aatgatggggcgatggggcccaggggagaacgtggagccgacggtttccctggcaaggca
ggaataaagggggatgaaggacctccgggtcccagaggacccccaggggagagaggagta
gctggacctcctggacaagcaggtgttgatggagtgagagggggccagggtgtcccggga
gaaagaggtgcgggaggtcctgtcgggccaaagggcgagaagggcgacaagggtgatgtg
ggacagaggggcccaccgggcattccaggagatgtggcaaatgtcatccctgagcctggc
atgcctgggaagcctggcgagaaaggagagaagggggaacaaggaaaaccaggcgagatg
ggtcaaagaggtttgcctggtgaacaaggctttaaaggactccctggaccagtaggacca
aagggagacagtggacctacaggagacccggggcgtgttggagaccccggtccacctggc
gctgctggttccccgggtccacgcggagcagccggagatgctggcttacctggaatcatc
gggcctccgggtccagctggacagagaggagacaagggtgatccaggtaaaccaggacag
gctggacccacaggaccacccggagagccaggtgtaattgggccccctggaccaccagga
aaggggaaggacggccaatctggtgaaccaggaccacagggagttcaaggacccccaggg
ccaaagggtccaccaggggcgagaggagacctgggtccgcccggggagagggggtctccg
ggagaaggcaaagtgggaccagtggggcctcctggacaaagtggggaacccggagcagcg
ggtatgacgggtccacctggagtcgctggtcctcaaggcccaccaggacataatggttta
cctggaaggccgggagagaaggggtcaccaggagagcctggaaaaccagtggacatctct
gacctcaacctgaaggacgtatgctcagactgccccgcgggtcctcctggaccacctgga
caacctggagtcccaggggacaaaggacacccaggtcttgctggaaaaaatggccaagac
ggctaccaaggacaaccgggaccagccggacctcaagggccccctggagctgatggtgca
aagggtggtaaaggtgaccaaggaccccccggaggccctggagacaaaggagacaagggt
catccaggacctccaggacatcccgggacccctggcttgatgggcacaccaggtactgat
ggacagcctggccctgttggccccccggggccccctggagaaaagggtaaagagggtctc
aaaggaattcaaggacctgcaggcctacctggtttgattggtccacctggaaaaactgga
aaagatggcagatcaggtgaaccaggagaccagggcaagcaaggtgaacccgggctgcca
ggaaatcccgggcttaggggactcccgggttttaagggccacagaggggaaccaggagct
ccaggagttaagggagaagatgggaagtcgggctcacctggacgtgatggaaaacatggg
aaggatggccccaggggatctccaggaccagaaggactgcttggaccaagaggagaacca
ggcaaacaaggtgaaccaggaccatcaggaaaagcaggtcttccaggaacacctggtctt
agaggcgagaagggcgaggctggcagtccaggattacccggctttagtgggcccaaaggt
cccacggggccaccaggtccagctggtccagagggcaagcagggaattcctggcagagtt
ggagatcgtggtatcaaaggcgataagggagatccaggaacaaaaggggacaaaggacac
tcaggggatccaggtatgcctggaaaccctggagtcccaggtagaaagggtcacacgggg
atgatgggtatgccaggacaaccaggtgaaattggagcccctggggcacaaggacccgta
ggaaaccccggcatcccaggccaaaggggggagtcggtatcactggaggagatgagacgg
ctcatccaggaagagctggccaagcagttagatgccaagatggcttacctcatggctcag
atccaaccagctcatgtgaagagtacagcgggccgcccaggacctccaggacctcctggt
aaagacggcagttctggacggcctggcccacccggtgagcctggtatgcccgggatgaat
ggaggagagggaccgaggggacccatgggccccaaaggtgagaaaggaggtaaaggagaa
aaaggagaacctggaattggcgatcgaggagaacctggacctgttggcccaataggtcca
gctggtattcctggttatggtaaagatgggagcccgggacaagctggagcccagggagag
ccaggaaaccctggctctgcaggccagcctggacctcagggtcctcccggccagtgtgac
cccagccagtgtgcctactatgccagcttggcacaaagacctcacaccaaaaacgtgaag
gggaaataa
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integrated database retrieval system
