Takifugu flavidus (sansaifugu): 130518521
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Entry
130518521 CDS
T09160
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130518521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130518521
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130518521
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130518521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
130518521
NCBI-ProteinID:
XP_056877135
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All DBs
Position
21:6454575..6470153
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AA seq
917 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVGEGVEQFEDIWQKLHNAANTNQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRNLVDNRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGTWLTNMIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDTLQVDAIRKIKDDVEYYIDSSQDPDFEDNEFLYDDLDLEDIPQTLVA
TSPPGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSSSSVSGLTSSALVSMTTMAGGGNSSSSGSNSHHGTSGG
LLSNTSVGSYSNATQQPPHPAAQPPAKNLVSSASSASISNSIALANSHPASSASSPPNAS
TLLTSNSQPQILSGPPPTSNSLSLGLSLGKGGISCSVTTSPMSGSLGLSGMPASLNTMAS
LLSNSTPAPYAQAAAVGAVGSGLPGSLGGIITTTSNSTLGSIGSVTVGGPTSSSGGLLGS
VSGVNSIASGILGLSSGQAGMQGSSLVSLSPVGSLAPGGSVGVIGSNSSSSGSAGGSLSL
SIRPPSQQKQTSSTSYSAVVADSTTDSTLNSTSQSQISQSLSLTSTANQSKDSGPSLLSS
LSLSSSSPSPAFYSEAKTASSGALLNGPLSYSQSSDIIKPPEPLSSLKSMAERAALSSGI
DGDVPSLHLTSDIFPSSTTAPTGPTSAPQSLLSEVSIPPSLGVCPLGPVPLSKDQQYQQT
MEESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFY
YLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRK
KEGFTFEYRYLEDRDLQ
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtaggggaa
ggagtggaacagtttgaagacatttggcagaagcttcacaatgcagcaaacacaaaccag
aaggagaaatatgaagcagacctcaagaaggagattaagaagctgcagcgtcttcgggac
cagatcaagacgtgggtggcatccaacgagatcaaagacaagaggaacttggtggacaac
cgtaaactcatagaaacgcaaatggaaagattcaaaatcgttgagagagaaacaaagaca
aaagcttactcaaaagagggcttgggtctggctcagaaggtggaccctgcccaaaaggag
aaggaggaggtcggcacatggctgacgaacatgatcgacacgctgaacatgcaggtggac
cagtttgagagtgaagtggagtctctttcagtccagacgagaaagaagaaaggagataag
gataagcaggaccggatcgaggagctgaagaagttcatcgagaagcaccggtaccacatc
cggatgttggagaccattctgaggatgctggacaacgacacactgcaggtggacgccatc
aggaaaatcaaggacgatgtggaatattacatagactcttcacaggatccagactttgag
gataacgagtttctctatgacgacctggacctggaagacatccctcagacactggtcgcc
acctcccccccaggacactcgcacttggaggacgagatcttccagcactccagcagcaca
ccgacctccaccacttcctcctcacccatccctccctcgcctgccacttgcactacggag
aactcggaggatgacaagaagagaggccgatcaacagacagtgaagttagccagtcacct
gtgaagaatggaaacccttcgtcctctctgtcctcttcctcgtcctcttcctcctcgtcc
tcatcttcttcatctgtttcgggactgacctcatccgccttggtctctatgacgaccatg
gccggaggagggaacagcagtagctctgggagcaatagtcaccacggcacctcggggggc
ctcctctctaacacctctgtcggcagctacagcaacgccacccagcagccgccccacccg
gcggcgcagccaccggccaagaacctggttagctccgcctcctcggcatccatctccaat
tccatcgccttggccaacagccacccggcctcctctgcctcgtctccccccaatgcaagc
acactcttgacatccaatagccagccgcagatcctgtcagggcccccgcctacctccaac
agcctcagcttgggtctctcgctgggcaaaggcgggatatcgtgctccgtcaccaccagc
cccatgtctggcagtctgggcctgtcggggatgccggcgtccctaaacaccatggcgagc
cttctctccaactccaccccagcaccgtacgctcaggcagccgctgtaggcgcggtcgga
tccggcctaccgggctctctgggcggcatcatcaccacgacatccaacagcactttaggc
tccatcgggagcgtcaccgtcggcgggccgacgtcctcgtctgggggcctgctgggctcg
gtgtcaggggtgaacagcatcgcatcagggattctggggttgagttctggtcaggcggga
atgcagggctcctcgctggtgtcgctgagtccggttgggagtttggcaccaggcggcagc
gtaggagtcatcgggagcaacagcagcagctcaggatcagcaggaggaagcttgtcgctc
tctatcaggccgccaagccagcagaagcagaccagtagcaccagttacagtgctgttgta
gcagacagcacaacagactccaccctcaacagcaccagccaatcccagatcagccagtcc
ttgtccttgacctctacagccaatcagtcgaaagacagcggtccaagtttactgagctca
ttgagtttgtcctccagctccccatcaccagccttctacagcgaggccaagaccgccagc
agtggcgctctgctaaacgggccactgtcgtactcacagtcctctgacatcatcaagccc
ccagagcctctgagcagcctgaagtccatggcagagcgagcagcgctcagctcagggata
gatggagacgtgccctccctgcacctcacctcagacatcttccccagcagcactacggcc
cccacgggccccacatcggcacctcagtccctgctgtcagaggtcagcatccctccgtct
ctgggggtctgtcctctggggccggtccccctgtccaaagaccagcagtaccaacagacc
atggaggagtcggcatggacgcacatgccccacccgtctgactctgagaggatcaggcag
tacctgatgaggaacccttgccccaccctgcctttccaccaccaggtgccgccgcctcac
tccgacacggtggagttttaccagaggctttccacggaaacgctcttcttcatcttttac
taccttgagggcaccaaggcccagtatctggcagccaaagctctgaagaagcagtcctgg
aggttccacaccaagtacatgatgtggttccagaggcatgaagagcccaaaaccatcact
gatgagtttgagcagggaacatacatttactttgactacgagaaatggggccagcgcaag
aaggaaggtttcaccttcgagtacaggtacctcgaagaccgagacctccaatga
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