Takifugu flavidus (sansaifugu): 130518970
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Entry
130518970 CDS
T09160
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03013
Nucleocytoplasmic transport
tfs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130518970 (upf2)
03015 mRNA surveillance pathway
130518970 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130518970 (upf2)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130518970 (upf2)
mRNA cycle factors
P-body specific factors
130518970 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
130518970
NCBI-ProteinID:
XP_056877939
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All DBs
Position
22:7777284..7787333
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AA seq
1287 aa
AA seq
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MTDVCFDTASSMPAERKRSVNMDEKDVCSFTNKDKDRDTDRRPASARDRAKDEAKMSSKK
EIGKEEKKKRLEEERKKKEEKERKKKEEEKQKEEEEQKKKEEEEKRQQEEQAKKLQEEEA
KRQREEEAALLKEKEEGHQLHQEAWERHQCRKELRNKNQNAHEGRPEEAFFSRLDSSLKK
NTAFVKKLRTLTEQQRDSLSNDFASLNLSKYIGEAVTSVVEAKLKISDVGCAVHLCSLFH
QRYAEFAPLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGIFTDKEGLSLIYEQ
LKNIIGTDRETHTHVSVVISFCKHCGDDVAGLVPRKVKVAAEKFGLGFPPSEIISTEKQQ
PFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLL
ANTQSLADLLDENMPELPQDKTVQEDHGPGIDIFTPGKPGDYDLEGGIWEDEDARNFYEN
MVDLKAFVPAILFKDNEKSSQGKDKEETKEGKEAKDSGSTTEELELELETLDIADDPIEL
EGPDEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFC
MNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMCDVADDLCSMLKGDFRFHI
RKKDQINIETKNKTVRFIGELAKFKMFSKTDTLQCLKMLLSDFTHHHIEMACTLLETCGR
FLFRSPESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPVEKMVKKKRPPLQ
EYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKGYLICCMVNIWNVKYNSIHCVANLLA
GLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRT
LYSFISFGINQDGSPSSLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRY
IWWKKSVDVWTKDHPFPIDIDYMISDTLELLRPKMRFCCSLDEATKQIIDLEREVLIKLG
LANEREGRTSAMSEAEGLDEEDDEGDEDEEGGAETEEQSGNESEMNEQEEDEGSENEEEE
REEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQ
RSGETVKVHQLDVAIPLQLKSQLKKGGSAQPCISDADADISNTMQFVMLTRKGNKQQYKI
LNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTN
RERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgacactgctagcagtatgccagcagaacgtaaacgctcagtg
aacatggatgagaaagatgtttgctctttcaccaacaaagacaaggatagagacactgac
cggagaccagcatctgcccgtgaccgggccaaagacgaggccaaaatgagtagcaagaaa
gagataggaaaggaggagaagaagaagcgccttgaagaggaaaggaagaaaaaagaggag
aaggaacgaaagaagaaagaagaggagaagcagaaagaggaggaagaacagaagaagaaa
gaagaggaggaaaagagacagcaggaggagcaggcaaagaagctccaagaagaggaggcc
aaaagacagcgtgaagaggaggcagcgctcctgaaggagaaggaagaaggacatcagctg
catcaggaggcctgggaacgccaccagtgtagaaaggagctccgcaacaaaaaccagaat
gcccatgagggacggcctgaggaggctttcttcagccgcctggactcaagccttaagaag
aacacggcgtttgtcaagaagctccgaacgctcacagagcagcagcgagactcgctgtcc
aatgactttgcctctctgaatctgagcaagtacattggtgaggctgtgacctctgtggtg
gaggccaagctgaagatctcagatgttggctgtgccgtacatctctgctccttgttccac
cagcggtatgcagaatttgctccactgctcttacaagcatggaagaagcactttgaggca
aggaaggaggacaaggcacccaacgtgagcaagctgcgcactgacctgcgattcattgca
gagctcaccatcgttggcatcttcacagacaaagagggcctttctctcatttatgagcaa
ctcaagaacattattggcactgaccgggagactcacactcatgtgtcagtggtgattagc
ttctgcaagcactgtggagatgatgttgccggtctggtgccacgcaaagtgaaagtggct
gcagagaagtttggcttgggtttccctccgagcgagatcatcagcaccgagaagcaacag
ccttttcagaaccttttgcgagagtacttcacatctctcaccaaacacttgaagaaggac
catagggagctgcagaacatcgagaggcagaacaggcgtatcctccactccaaaggagag
ttgagtgaggatagacataagcagtacgaagagtttgccacatcctatcagaagctgctg
gccaatactcagtcactggccgacctactggatgaaaatatgccggagctgccgcaggac
aaaactgtgcaggaagatcatggtcctggcattgatattttcacccctggcaagcctgga
gattatgacttggaggggggcatctgggaagatgaagacgctcgtaacttttatgagaac
atggtggatttgaaagctttcgttcctgccatcctcttcaaggataacgaaaagagcagc
caaggcaaagacaaggaagagaccaaagaaggaaaagaggcaaaggactcgggaagcacc
acagaggagctggagctggaactggaaactcttgatattgcagatgaccctattgaacta
gagggcccagatgaggctgaaaatgaggaattggccaagaaactgcttgatgagcaagaa
caagaggatgaagaggcgaacaccggatctcacctgaagctaattgtggatgccttcatc
cagcagctgcctaattgtgtgaacagagaccttatagacaaggctgcaatggatttctgc
atgaacatgaacaccaaatcaaacaggaggaagctggtgcgagcgctcttcactgttccc
aggcagaggctggatcttctgccattctactctcgtctggtggcgactcttcacccctgt
atgtgtgatgtcgctgatgacctctgctcaatgctgaaaggagacttcaggttccacatt
cggaagaaggaccagatcaacatcgagacaaagaataaaactgttaggttcattggagaa
ctggcaaaattcaagatgttctcaaaaactgacacgctgcagtgtctaaagatgctgctg
tcagacttcacccaccaccatattgagatggcgtgcactcttttggagacctgtggacgc
ttcctcttcagatcacctgaatctcacctgcgtaccagtgtcctgctggagcaaatgatg
cgaaagaaacaggcgcagcacctcgatgcccgctacgtgaccatggtggagaatgcctac
tattactgcaacccaccgcctgtggagaagatggtgaagaagaaaagaccaccgctgcag
gagtacattcgcaagctgctctacaaagacctgtcgaaggtgaccaccgagaaggtactg
aggcagatgcgcaagctcccatggcaggaccccgaggtgaaaggctacctgatctgctgc
atggtcaatatctggaacgtcaagtacaacagcatccactgtgtagccaacctgctggct
ggtctggtggcctaccaggaagatgtgggcatccatgtggtggatggtgtgctggaggac
atccgtcttggcatggaggtcaaccagcctaagttcaaccagaggcggatcagcagcgcc
aagttcctgggggagctctacaactaccgcatggtggaatcggccgtcattttccgcacc
ctctattccttcatctccttcgggatcaaccaggatggaagccccagctcactggaccca
cctgagcacctattccgtatccgcctggtgtgcacgctactcgacacctgcggtcagtat
ttcgatcgcggctccagcaagaggaagcttgactgtttcctcatctacttccagcggtac
atttggtggaaaaagagcgtggatgtttggaccaaagaccacccgttccccattgacatt
gattacatgatcagcgacactctggagcttctccggccaaagatgcggttctgttgctca
ctggatgaggctacgaagcagatcattgacctagagagggaggtgctcatcaaattaggg
ctggccaacgagagggaaggacgcaccagtgctatgagtgaagctgagggcctcgatgag
gaggatgatgaaggcgacgaagacgaggagggcggcgcagagaccgaggagcagtcgggc
aatgagagcgaaatgaacgagcaggaggaagatgaggggtctgagaatgaggaagaggag
cgggaggaagaggaggaggagaacaccgactacctgaccgactccaacaaggaaaatgag
acggatgaggagaataatgaggtgaccatcagagggggagggctgaagcacgtggcgtgc
gctgaagacgaagacttcatccaggctctggataagatgatgctggagaatctgcagcag
cgaagtggcgagacggtgaaggtgcaccagctggacgtggccatcccgctgcagctgaag
agccagctgaagaagggagggtctgcgcagccgtgcatcagcgacgcagacgccgacatc
tccaacaccatgcagttcgtgatgctgacccgcaagggcaacaagcagcagtataagatc
ctcaacgtgccgctgtcctcccacctggctgccaaccacttcaaccagcagcaggctgag
caggaggagaggatgaggatgaagaagctgacgctggacatcaatgagaggcaggagcag
gaggactaccaggagatgatgcagtcactcgcccagcgcccagctcccgctaacaccaac
cgagagcgtcggcctcgctaccagcaccctaaaggtgcccccaatgccgacctcatcttc
aagactggaggaaggagacgctga
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