Takifugu flavidus (sansaifugu): 130519791
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Entry
130519791 CDS
T09160
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tfs03016
]
130519791 (rtcb)
Enzymes [BR:
tfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
130519791 (rtcb)
Transfer RNA biogenesis [BR:
tfs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130519791 (rtcb)
Prokaryotic type
tRNA splicing ligases
130519791 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
130519791
NCBI-ProteinID:
XP_056879359
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSRNYNDELQFLDKIGSNCWRIKKGFVPNMQVEGNFYVNEALEKLMFEELRNACRGGVGG
FLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMNDPAAVVSPGGVGFDIN
CGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLR
EGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDY
AAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKICVNDRQLACARITSP
EGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEEH
VVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTE
TFGTTCHGAGRALSRAKSRRNLDFQDVLDRLADMGIAIRVASPKLVMEEAPESYKNVTDV
VNTCHDAGISKKAIKLRPIAVIKG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaattataacgatgagctgcagttcctggataagatcggcagcaactgctgg
aggatcaaaaagggctttgttcccaacatgcaggtggaaggaaacttctatgtgaacgaa
gcgcttgagaaactgatgtttgaggagctgcggaacgcctgtcggggaggtgtgggtggt
tttcttcccgctatgaaacagatcgggaatgtcgcggcactgccaggaattgttcataaa
tccattggactccccgatgttcactcgggatatgggtttgccattggcaacatggcagct
ttcgacatgaacgacccagcggccgtggtgtctcccggtggtgtcggctttgacatcaac
tgtggcgtccgactgctgaggacaaaccttgacgaaggtgatgtccagccggtgaaggag
cagttggcccagtcgctgtttgatcacatcccagtgggagtaggatccaaaggagtcatc
cctatgggagccaaggacctggaggaggccctggagatgggtgtcgactggtccctgagg
gagggctatgcctgggctgaagataaggagcactgcgaggagtatggcaggatgctgcag
gcagaccccaacaaagtgtcctccaaagccaagaaaagaggccttcctcagctgggaacg
ctgggagctggaaaccattatgctgagattcaggtggtggatgagatctacaatgactat
gctgccaagaagatgggtattgaccacaaaggtcaggtgtgtgtgatgatccacagtggc
agcagaggccttggacaccaagttgcaacagatgccttggttgccatggagaaagctatg
aagagagataaaatctgtgtgaacgaccgtcagctggcttgtgctcgcattacatcaccg
gaggggcaggattacctgaaggggatggcggctgcaggaaactatgcctgggtcaatcgc
tcatctatgacgttccttaccagacaggccttttctaaagtgtttgcaacaacgcctgat
gaccttgacatgcacgtcatctatgatgtctcgcacaacattgccaaagtggaggagcat
gtggtggatgggaaacagaaaacgctgcttgtccaccggaagggttccacacgagcgttc
ccaccgcaccacccactcatccctgtagactaccagctgacaggccagccagtactgatc
ggagggaccatgggaacctgcagttatgttctaacgggcacagaacaaggcatgactgag
acatttggaaccacatgtcacggggcgggccgtgctttgtcacgcgcaaaatctcgcagg
aatcttgacttccaggatgttctggacagactagctgacatgggaattgcaatcagagtg
gcttcaccaaaactggtgatggaggaggctcccgagtcatacaaaaatgtgacggatgtg
gtgaacacatgtcatgacgctggaatcagtaagaaggcgatcaaactgcgaccaatagcc
gtgatcaaaggctga
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