Takifugu flavidus (sansaifugu): 130521224
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Entry
130521224 CDS
T09160
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfs03000
]
130521224 (sox6)
Transcription factors [BR:
tfs03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130521224 (sox6)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
130521224
NCBI-ProteinID:
XP_056880828
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All DBs
Position
2:16354221..16458815
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AA seq
780 aa
AA seq
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MEGFLRSSFLLSRVMSSKQATSPFASVVDGDDAMSQDNLSWEKEESAEAHGTPQLPLHSL
LHGKAQHEEMQQLSSIPPESEWDSLVSAQQRMESDSNKVCSQYSFRNNSTSPHKPEEGAR
ERSDMLSGSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESTCMEKLLSKDWKEKME
RLNTSELLAEVKGTPESLAEKEHQLSTMISQLISLREQLLAAHDEQKKLAASQMEKQRQQ
MELARQQQEQIARQQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAA
AQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKV
PQLPQPLNTSGPISPSSLKNDKISTSPLTQVKEEGTQPLNLSARPKTTDMVKSPTSPTQN
LFLGSKNSPSLLPKGGIPSPLGGGLGRSSSLDILSSLNSTALFGDQDTVMKAIQEARKMR
EQIQREQLQHHQQGMEAKLSALTSVGLNNCRTDKEKVHFDSIGHHFGKLGEEGKIGHRVI
DLTRPEDLDGGTGSAEARVFREARGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHN
SNISKILGSRWKAMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPKRTCIIDGKKLRIG
EYKQLMRSRRQEMRQFFTVGQPPQIPITTSPSMVYPGAITMTNTTPSPQMTSECSSASAS
PDPSIPVIQSTYNMKLEPNAMANSEPVNGEDEMDLYEDFEDEPKSDYSSENDTQEPVSIN
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggagggctttcttcgtagcagctttttactgagcagagtcatgtcttccaagcaagcc
acgtctcctttcgcctccgtggttgacggggatgatgccatgagtcaggacaacttgtcg
tgggagaaagaggagagcgcagaagcccacggcacgccgcagctgcccctgcacagcctg
ctccacggaaaagcccagcacgaggaaatgcagcagctcagcagcataccgccggagagc
gagtgggacagcctggtgtcggcccagcagcgcatggaatctgacagcaataaagtatgc
tcccagtactccttccggaacaattccacctccccgcacaagccagaggagggggcccgg
gagcgaagcgacatgctgagcggatcagcgtttggaactccggagcgccgtaaaggaagc
ctggcagacgtagtggacacactgaagcagaagaaactggaggagatgacaaagacagag
caagacgaatccacttgtatggagaaacttctctctaaagactggaaggagaagatggaa
cggctcaacaccagtgaactgctggcagaagtcaaaggtactccagagagcctggcagaa
aaggaacatcagctctccacgatgatcagccagctgatcagcctgcgggagcagctcctg
gccgcccacgacgagcagaagaagctggcggcctctcagatggagaagcagaggcaacaa
atggagctggcgcgccagcaacaggagcagatcgcgcggcagcagcagcagcagctcctg
cagcagcagcacaaaatcaacctcctccagcagcagatccagcaggtccagggtcacatg
cctccgctcatgatccccatttttccacacgaccaacgcactctggcagcagcagctgcc
gcccagcaaggctttctcttccctccaggaatgtcttataagccaggtgataactacccg
gtgcagttcattccctccacaatggcagctgcagcagcgtcaggattgagccccctccag
cttcagcaactctatgccgcccaacttgccagcatgcaggtctctcccggagccaaggtg
ccccagcttccacagcccctcaacaccagcgggcccatttctccttcgtctctgaagaat
gacaagatctccaccagccccctcactcaagtcaaggaggaaggaacacagccacttaac
ctgtctgcgcgaccgaagacgacagatatggtcaagtcccccacgtccccgacacaaaac
ctgtttctcggcagtaaaaacagtcccagccttctccccaagggtgggattcctagtcca
ctgggaggaggccttggccgtagctcatctctggatattctgtccagcttaaactccacc
gcgctgttcggggaccaggacacagtgatgaaggccatccaggaggcccggaaaatgcgg
gagcagatccagagggaacagctgcagcatcaccagcagggcatggaggcgaagctgtcg
gccctcacttcagtgggcctcaacaactgcaggaccgacaaggagaaggtacacttcgac
agcatcgggcaccactttggcaagctgggtgaagaaggaaagattggccacagagttatt
gacctgaccaggccggaggatctggacggaggcaccggatctgcagaagcgcgagtcttc
agggaagctagaggaaggaacagcaatgagccccacattaaaaggccgatgaacgcgttc
atggtgtgggccaaggacgagcggcgcaagatcctccaggccttccctgacatgcacaat
tctaacataagcaaaatcttaggctctcgatggaaggccatgtccaaccaggacaagcag
ccctactatgaagaacaggcccgtttgagtaaactccatctagagaagtacccaaattac
aagtataaaccccggcctaagaggacctgcatcatcgatggaaaaaaactccgcatcgga
gagtacaagcagctgatgcgctcacggcggcaagagatgaggcagttcttcactgtggga
cagccaccgcagatccccataactaccagccccagcatggtctacccaggggccataacc
atgacgaacaccacaccgtcacctcagatgacgtccgagtgctcgagtgcttcagcaagt
ccggatccgtccatccccgtcattcagagcacctacaacatgaagctagagcccaacgcc
atggcgaacagcgagccggtcaacggcgaggacgagatggacctgtacgaggactttgag
gacgagcccaaatcggactacagtagcgaaaatgacacacaagagccggtcagcatcaac
tga
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