Takifugu flavidus (sansaifugu): 130521600
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Entry
130521600 CDS
T09160
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130521600 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130521600 (dhx38)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130521600 (dhx38)
Spliceosome [BR:
tfs03041
]
Complex C
Other components
Step II factors
130521600 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
Flavi_DEAD
PhoH
AAA_30
AAA_7
TssR_VWA
Motif
Other DBs
NCBI-GeneID:
130521600
NCBI-ProteinID:
XP_056881253
LinkDB
All DBs
Position
2:17289147..17303988
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AA seq
1244 aa
AA seq
DB search
MMDDDVSMHRLEGEDPTAQIGGLIVKKKSAAAEPHVFRAPTPRTSLLGLDLLAAQKRRER
EEQADNERNSKKSKVSSYKEWEEAKSDSGSDEEEDEKDKHAKKERKYRVTGSETPSNPGG
VSEEFRRRHQQREKDRREHGVYASSKEERNREKDREKNRDRERDRRSERDDRGNSQSRSE
RGERSERSMRDGWSGRLSRGIRRDEPLTPQHHPKGSFTPSRSNWEEDDSGFGSSRHSQWE
SPSPAPSGKETDRSERSQRSGQESERRDRSVRGRYPNDTPLPTPSYKYNEWANDRKHLGS
TPRLSQGKARKGDGEGGILFDNEDEKEQWEEDQKQADRDWYMMDEGYDEFHNPFTMTSEE
YIKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDEDFEEDNAAKVH
LLVHNLVPPFLDGRIVFTKQPEPIIPVKDPTSDMAIISRKGSQLVRKHREQKERKKAQHK
HWELAGTKLGDIMGIKKKEEEDVCGGKPVGEDGKVDYRAEQKFAEHMKEKNEARSEFAKK
KSLLEQRQYLPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQLTQYLHEDGYTSYGMVGC
TQPRRVAAMSVAKRVSEEIGSNLGDEVGYAIRFEDCTSEKTLIKYMTDGILLRESLRESD
LDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKFAAFFGNVPIF
HIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGLMGDILIFMPGQEDIEVTSDQIVE
RLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVVD
SGYCKLKVFNPRIGMDALQVFPISQANANQRSGRAGRTGPGQCYRLYTQSAYKNEMLTTT
IPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTPT
GRLMVEFPLDPALSKMLIVSCDMCCSADILIIVSMLSVPAIFYRPKGREEESDQVREKFS
VPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIMVQQKMNLVSC
GSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIIYHEL
VMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAREEISSMETEMSMAEQQ
LRARREEQEKKSNLGSVRAVKICTPGRKEEAPMTPKRTPARFGL
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgatgacgtgtccatgcatagactcgagggagaggacccaactgctcaaatt
ggtggactgatagtaaagaagaagagtgctgctgcagagccgcacgtgtttcgtgcaccc
accccacgtacctccttactgggtttggatttgctggctgcccaaaaaaggagggagcgt
gaggaacaggctgataacgagaggaatagcaagaaatcaaaggtttcttcctacaaggaa
tgggaggaagctaaaagtgattctgggtctgatgaagaagaggatgaaaaggacaaacat
gctaagaaagagaggaagtatcgtgtgacgggctccgaaacgccctcaaaccccggaggg
gtcagtgaagagttccgtcgcagacaccagcagagggagaaggaccgacgtgagcacggc
gtctacgcctcctccaaggaggagcggaaccgggaaaaagacagagaaaagaacagagac
agggaacgagaccgaaggagtgaaagagatgacagagggaacagccagagccgttcagaa
cgtggggagagaagcgaacgctctatgagggatggctggtccggacgcctcagccggggg
atcaggagagatgaacccttgacacctcagcatcaccctaaaggttctttcacgccttcc
cgctccaactgggaagaggatgacagcggttttggcagttcacggcattcccagtgggag
tctccctctcctgctccgtctggcaaagagacagatcgctctgagcgtagccagcgttcc
ggccaagagagcgagaggagggacaggtcagtcagaggccgttaccccaacgacacccct
ctacctaccccatcatacaagtacaacgagtgggccaacgacagaaagcatttaggatct
acacctcgcttatcacaaggaaaagcgaggaaaggtgatggcgagggcggaatcctgttt
gataatgaagacgagaaggagcagtgggaggaggaccagaaacaagctgacagagattgg
tacatgatggatgaaggctacgatgagttccacaaccccttcactatgacctctgaggaa
tacattaagaagagggagcagatccttcagaagcagactcagaaaagaatctcagcccag
aaacgacagataaatgaggataatgagcggtgggagaccaaccgcatgctgaccagcggt
gtggtgcagaggttggaggtggatgaagactttgaggaagataatgctgctaaagttcac
ctgttggttcacaacctggtccctcccttcctggatggacggatagtcttcaccaagcag
ccagaaccgatcatccctgtgaaagatccgacctctgacatggcaattatttcccgaaaa
ggcagccagcttgtccgcaaacaccgtgagcagaaagaacgcaaaaaggctcagcataaa
cactgggaactggctggcacaaagctgggggacatcatgggcataaagaagaaagaggaa
gaagatgtctgtggaggcaagcctgttggagaggatggcaaagtagactacagagctgag
cagaaatttgcagaacacatgaaagaaaagaatgaggcccgcagtgagtttgccaagaag
aaaagtcttctggaacagagacagtacttacctatatttgctgtgagacaacaacttctt
aacatcatcagggacaacaacatagtgatcgttgttggagagacgggcagtgggaagacc
acccagctgacacagtatctgcacgaggatggctacacaagctatggcatggtaggttgt
acccagccccgaagagtggcagccatgagcgtggccaagagagtcagcgaagagatcggc
tccaacctcggagatgaggttggttatgctatccgttttgaggactgcacgtctgagaaa
actttaataaagtacatgacagacgggatcctgctgagggaatcgctgagggagtccgac
ctggaccactacagcgctgttatcatggacgaggctcacgaacgctccctcaacacggat
gttctctttggcctgctgcgtgaggtggtatcccgacgtacagatttgaaactcatcgtt
acctcggcaaccatggactcggacaagttcgctgcattttttggcaatgtacctatattt
cacatcccaggaaggacgtttcctgtagacatcttgtttagcaagactcctcaggaggac
tatgtggaggcagcagtgaagcaggccctgcagatccacctcagtggcttgatgggagac
atcctcatcttcatgcctggtcaggaggacattgaggtgacgtccgatcagatcgtggag
cggttggaagagctggaaaatgctccggcattagccgtgctgcctatttactcccagctg
ccctctgacctccaggccaagattttccagaaggctccagatggtgtgagaaaatgcatc
gttgctaccaacatcgctgagacctctctcactgtggatggaatcatgtttgttgtggat
tcaggatactgcaaactcaaggttttcaatccccgaattggaatggatgctctgcaggtt
tttcccatcagccaggctaatgccaaccagcgttctggtagagcgggacgtacaggaccg
ggccagtgttacaggctgtacactcagagcgcctacaaaaatgagatgctgacgaccacc
ataccggaaatccagaggaccaacctggccaacgtggtcctgctgttgaagtctctgggc
gttcaggatttgctcctcttccacttcatggacccaccccctgaagacaacatgctcaac
tccatgtaccaactctggattttaggagctctggacaacaccggcggtttgaccccaacc
ggacgtctgatggtggagtttcccctcgaccccgccctctccaagatgctgatcgtgtcc
tgcgacatgtgctgcagcgctgatattctcatcatcgtctccatgttgtcggtcccggcc
atcttctacagaccgaagggccgtgaggaggaaagtgaccaggtgagggagaagttctcc
gtcccggagagcgaccacctcacctaccttaacgtctacatgcagtggaagaacaacaac
tactccagcatctggtgcaacgaccacttcatccacaccaaggccatgcgcaaggtgcgt
gaggtgcgctcccagttaaaggacattatggtgcagcagaagatgaacctggtttcctgt
gggtcagactgggacatcatcagaaaatgcatctgcgccgcttactttcaccaggctgcc
aagctcaagggcatcggtgaatatgtcaacgtgaggacaggcatgccgtgtcacctgcac
cccaccagctccctctttggcatgggctacacgcccgactacatcatctaccacgagctc
gtcatgacgaccaaggagtacatgcagtgtgtgaccgcagtggacggggagtggctggca
gagctgggccccatgttctacagcgtcaagcaagccgggaaaagcagacaggagaaccgg
cgtcgtgccagagaggagatcagcagcatggagacggagatgtccatggcagagcagcag
ctgcgagcccgtcgagaagaacaggagaagaagagcaacctgggcagcgtcagagcagtg
aaaatctgcaccccaggacggaaagaggaggcccccatgacgcccaaacgcacgccggcc
cgatttggactgtag
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integrated database retrieval system
