Takifugu flavidus (sansaifugu): 130522178
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Entry
130522178 CDS
T09160
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130522178
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
130522178
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1
UBA_N4BP1_C
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
130522178
NCBI-ProteinID:
XP_056882232
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All DBs
Position
3:16944133..16957724
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AA seq
948 aa
AA seq
DB search
MGQKDHVESAAGHILHLGLDLEYLHVARADRHTGGSDEPPAMEEQGETSGSSDKAASPLP
DAVEENIRSDADSELAPSSTIILHEDGHEGSTPGKNTHQPLCRTQCVDLGTEGPPELSPE
LKHDNPLPPVTPCEEPPEPPEPPPPEPVGNDGRKGYQAKLDFALKLGYSEETVRQVLSKL
GPETLINDILGELVKLGNKSDNEQPARTLASTSSSSSSSSSCGSSDVLDGQRSNSPCPSD
SLGDQDNLRPIVVDGSNVAMSHGNKEVFSCQGIQLAVDWFLERGHHDVTVFVPAWRKEQS
RPDAPITDQEILRRLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYR
DLANEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKRPVMPEQKKQPCP
YGKKCTYGHKCKYYHPERGAQPQRAVADELRASAKTCVMVKSQGDAGLVKSHSVPAGSME
ARKGAPKRQSDPSIRALSYSDAEEKLLTKGRADIQKSMCGSASASCSGSVTMSPALEGVP
PASLSFPQDQQSRAGTPHGLATSNHDLYPHCESPDLNYYSVTRAYSGLSLSTRRSPDCRF
PNDTDLRLGSMGSTGSECGSESSVSCSSSCDSYSERPCPGCPSDSLLEDGVHFVNPHSRV
YPSATNQELCGLHLADYTNLQHGHSSHPGIHGYHLSIAHGQSCAHEQPPPEAPPKRPLYP
LPPHLQHQPLSARSSCPGDYHSLPQPNPHPPGSPLGRCLAPTRAGSVSDSHLYEHLSAPH
HHHRTKAPPSWDSYYRHNPLPPSRYELSAYLPDSQQTSWHGSAWAQDGYGQHHSSHAGLH
PSPTHYVNHPPPPSHSPHPPSASHQPYSRHLLVPSHTPPLSYMQQPPESPTRSRYSDARE
KVYVNLCNIFPTELVSRVMARSPHVTDPQQLAAAILAEKALGTGLLIN
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggccagaaggaccatgtggagtcagcagcaggccacatcctccacctggggcttgac
ctggagtatctccacgtagctagggctgaccggcacactggcggctctgacgagccccct
gctatggaggagcagggggagacctccggcagcagcgataaggctgcttcccccctgcca
gatgccgtggaagagaatatcaggtctgatgcagattctgaacttgccccgtcttccacc
atcatcctccatgaggacggacacgaggggtccactcctggtaaaaacacgcaccagcca
ctgtgtcgaacccagtgtgtggacctaggtaccgagggtccccctgaactctctccagag
ctcaaacatgacaaccctttaccacccgtcaccccgtgcgaggagccacctgagccaccc
gagcctcctcccccagaaccagtgggtaatgatggtaggaaggggtaccaggccaaactg
gattttgctctgaagctaggctactctgaagagactgtgcgacaggtgctgtccaagctc
ggccctgaaaccctaatcaatgacatactgggagagctcgtcaaactggggaacaagtcg
gacaacgagcagccggcgcggacattggcctccacttcgtcttcttcgtcctcctcttcc
tcctgtggctcttcagatgtgttggacggacagaggtcaaactctccgtgcccttcagac
tctctgggtgaccaggacaacctgcggccaatcgtggtggacggcagcaacgtagccatg
agccatggcaataaggaagtgttttcctgccaagggatccagctggctgtagactggttc
ttagagcgtggccaccatgacgtcacggtgttcgtgcctgcatggaggaaagagcagtcg
cgccctgacgccccaataacagatcaggagatcttgcgtcgcctggagaaggagaagatt
ctggtgttcaccccatctcggcgtgtccaaggccgtcgtgtggtttgctatgacgaccgc
ttcattgtgaagctggcgtacgagtccgacggcatcatcgtctccaacgataactaccga
gatctggcaaatgagaaaccagagtggaagaagttcatcgacgagcggctgctcatgtat
tcctttgtcaatgacaaattcatgcctccggatgatccacttggtcgccatggccccagc
ttagacaactttctaaggaaaagacctgtcatgcccgagcagaagaaacagccatgtcca
tatgggaagaagtgcacttacggccacaagtgtaagtactaccatcctgagagaggggca
cagcctcagcgtgccgtggcagatgagctgcgtgccagtgccaagacttgtgttatggtt
aagagccagggagacgccgggttagtgaagagtcatagcgtaccagctggcagcatggag
gcgagaaagggcgctcccaaaaggcagtcggacccgagcattcgcgccttgtcctacagc
gacgcagaggagaagctgctgaccaaaggaagggcggacatccagaaaagcatgtgtggc
agcgctagcgctagctgcagcgggagcgtgaccatgtctcctgccttagaaggtgtcccc
ccagccagtctcagcttcccacaggaccagcagtccagagcagggacgcctcatgggcta
gcaacctccaaccatgacctttaccctcactgtgaatctccagacttgaactactattca
gtgacccgtgcctactctggcctgagcctctcgaccagacggagccccgactgccgcttc
cccaacgatactgacctgcggttgggctcaatgggctcaacgggttcggaatgtggcagc
gaaagcagcgtaagttgcagtagcagctgcgactcctatagcgagaggccttgtcccgga
tgcccctccgattccttgttggaggacggcgtccattttgttaatccccatagccgggtg
tatccgtctgcaaccaatcaggagctttgcggccttcaccttgcggactacaccaatctc
cagcacggccactcatctcatcctgggatacatgggtaccacctcagcatagcacacggg
cagagctgcgctcacgagcaacctccacccgaagcgcccccaaagcgtcctctttacccg
ctacctcctcacctccaacaccagccgctgtctgcacggtccagctgcccgggcgactat
cactcgctccctcagcccaatcctcacccgcccgggtcccctctgggacgctgtctcgca
cccacgcgagccgggagcgtgtcggactcgcatttgtacgaacacctctccgcaccacat
caccaccaccggacgaaagctccgcccagctgggattcgtactacagacacaatccgttg
ccaccgtcccggtacgagctgtcagcctatctgccggactcccaacagacatcctggcac
gggagcgcttgggctcaggacggctacggccagcaccattcgtcccacgcaggtctccac
ccgtccccaacacattacgtcaaccatccgccgcctccgtcccactctcctcacccaccc
agtgcttcccaccagccgtattcccgccacctcctggtgccctcccacaccccgcccctg
tcttacatgcagcagcccccggaatcaccgacacgcagccgctacagcgacgccagggag
aaggtttacgtcaacctgtgcaacatcttccccaccgagctggtgagccgagtgatggcc
aggagcccccacgtcacagacccccagcagctggcagctgcaatccttgcagagaaagcc
ctgggaactggtttattaattaactaa
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