Takifugu flavidus (sansaifugu): 130522813
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Entry
130522813 CDS
T09160
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03015
mRNA surveillance pathway
tfs04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130522813 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130522813 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfs03021
]
130522813 (sympk)
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130522813 (sympk)
Transcription machinery [BR:
tfs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130522813 (sympk)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130522813 (sympk)
U7-dependent histone pre-mRNA processing factors
130522813 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
AbiJ_NTD3
Motif
Other DBs
NCBI-GeneID:
130522813
NCBI-ProteinID:
XP_056883577
LinkDB
All DBs
Position
1:1844042..1851925
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AA seq
1212 aa
AA seq
DB search
MDMPTQEEATPSDIDMTTSERVVDLLNQAALISADEKLTILKQVQELIINKDPSLLDNFL
DEMIAFQTDKSIEIRKFVIGFIEEACKRDNELLLRLIANLNMLLKDEGVNVVKKAILTLT
QLYKVTLQWLVRSKTVSERQEACWDLVTQMKGDVLALLDSENDGIRTHAIKFTESLIITL
SARTSDSDIPKRQESDISLDKVPKDHSYIRYDVLSEEGKLALEKLLKFMIHPAISSINLT
TVLGSLATVARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVSVLKHPCS
LEFQGQISTLLLDLGMPQSEITRSTPAPREPRKRTRHEQYTEGKKVKMEPALMEDDDDKE
EPAPLAVPKPTTVPVAQSAIDLTAEFLHPLLNPENVANLVLISMVYLPDVMPASFQATYT
PVESAGTDAQIKHLARLMATQITAAGMGPGLEQCKARENDAGREDVDDESGSKDHLIKRK
IPTVMMGQAISVVGGYTEKAEETAPAAVKRLPEPILPTTQTKLAGTSGRKKVFRLSDVIQ
PLSESQIEALTSKAIKRILHSEKAIAQSGMSHVRVKLLTRLVTQFDGMMKDDVLKFVLED
IRARSDLAFSLLYQEYNTYLSQLPSGLLDSYDHCLYTLLSGLQEKPEQKDGLFTKLVLEA
PVITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVRTT
ALAFLKRMYEKDHLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEDTVRQCL
FLYLSLLPLNHQLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKG
AETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKSEVIQALPKLI
KLNPIVVKEVFNRLLGTQHSEGSSTVSPLTPGDLLIALHNIDSNKCDMKSIIKATNLCFG
EKNVYTSEVLAVVMQQLMDQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKY
PKVWEGFVKCCQRTKPQSYSVLLQLPSAQLTSMFERCPEMREPLLQHVHSLTPHQQAHIP
TSIMTVLEGEKKPDEPVMESELEPLSAAVEEQVPDSPSQETSVQQVTDVKEDEEPMEQEE
STPVIQEESDPVSQETPKVDVAEESTMSPERESPEELMETSQPEASPPQEPEKDVEAASN
EPEAESEKETVE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggacatgcctactcaagaggaggcgactcctagtgacatcgatatgacgacgagtgaa
agggtggttgatcttcttaatcaggctgccctgatttctgcagatgaaaaactaaccatt
cttaaacaggtccaggagctaatcatcaataaggacccctcccttctcgataatttcttg
gatgaaatgattgcctttcaaactgacaaatctattgaaataagaaaatttgtcattggc
ttcatagaagaagcatgtaagagggacaacgaactcctccttcgcctgattgccaatctg
aacatgttgctgaaggatgaaggtgtgaatgtggtgaagaaagccatcctcacactcact
cagctgtacaaagttactcttcagtggttggttcgctctaaaacggtgtcggagaggcag
gaggcatgctgggatcttgtcacgcaaatgaaaggggacgtccttgccttgttggattct
gaaaacgatggcattcgcactcatgccatcaaattcacagaatcgttaatcatcactctg
tcagcacggacatcagattcggacattccgaagcgtcaggagagtgacatcagtttggat
aaagttcccaaagatcactcgtacattcgttatgatgttttatctgaggaggggaagttg
gcactggaaaagctgctgaagttcatgattcatccggccatttccagcatcaacctcacc
accgtgctgggctctctggccactgtggctcgtcagaggccaatgttcatgtcagaggtg
gtgcaggcttatgagacattacacgcaaaccttcctcccactctggccaagtctcaggtc
agcagcgtaagaaagaacctgaagctgcacttggtgtcagtcctcaagcacccctgcagc
cttgaattccagggccagatcagcactctgctgctggacctggggatgccgcagagcgag
ataacgcgttccaccccggctccacgtgaaccgcgcaaaagaactcgccatgagcaatac
acagagggaaagaaggtcaagatggagccagccttgatggaagatgacgatgataaagag
gagccggcccccctggcagtccctaaacccaccactgttccagtggcccagtctgcgatc
gatctgactgcagaattcctgcacccgctgctcaaccccgaaaatgtggccaacctggtt
ctcatcagtatggtgtatctaccggatgtcatgccagcatccttccaggccacatacact
ccggtggagtccgcaggcaccgacgcccaaattaaacatctggctaggctaatggctaca
cagattactgcagcaggaatgggtccaggactggagcagtgcaaagccagagagaacgac
gcgggcagagaggacgtcgacgatgagtctggttctaaagaccacctcatcaagcgtaaa
atcccaactgtgatgatgggacaagcaatttctgtggtgggaggttacacagaaaaggct
gaggagacggcgcccgcagcagtgaagaggctccctgaacccatccttcctacaacacaa
accaaactggctggaactagcggaaggaaaaaagtgttcagactgtctgatgtcatccag
cctttatcagagagccagatcgaagccttgacctccaaagcaatcaaacgtatcctgcat
tcagagaaggccatcgctcaaagtggcatgtcccatgttcgagtgaagctgctcaccagg
ctcgtgacacagtttgatgggatgatgaaagacgacgtgctcaagtttgtcctggaggac
atcagggcgaggagcgacctggctttttctctcctctaccaagagtacaacacttatctc
agccagctgccatccgggctgctggacagctacgaccactgtctctacactcttctgtca
ggcctgcaggagaaaccagagcagaaagacggactttttacaaagctggtcttagaagct
cctgttataacagaatcagcactggaagtaatacgacgttactgtgaggatgagtcccgt
gtgtatttgggcatgacgactctgaaggagctcatcgtcaagcgaccttccaggcagttt
cagtacctgcacgtccttttggatctcagctcacacgagaaagagaaggtcaggaccact
gccctggcttttcttaagagaatgtatgagaaagatcatctcagggactatattgagaag
tttgcccttaactacatgcagttgcttgtccatcccaaccctccctctctgctgtttggg
gctgacaaggacacagaggttgctgctccctggactgaggacacagtcagacaatgtctc
ttcctctatctgtccttgctgcctttaaaccaccagctggtgcacgaactggcttctgtc
tacacggaagccattgctgacatcaaacgcagcgtgctgcgagcgatagagcaacctatt
cgtggaatggggatgaactcccctgagctgctgctgttggtggaaaactgtcctaaagga
gcagagacgttggtcaccagatgtcttcacattttgacagataaagtgcctccgtctcca
gagctggtggagagagtgagagacctttaccacaaacgggtgcctgatgttcgcttctta
attccagtcataaatggcctggagaagagtgaagtcattcaagctctccccaagctaatc
aaactcaaccccatcgtggtgaaggaggtgttcaaccgtctgctggggactcagcacagc
gagggaagctcgactgtgtctccgctcaccccgggagacctgctgatcgctctacacaac
atcgactccaacaagtgcgacatgaagtcgatcattaaagctaccaacctttgctttggc
gagaagaacgtatacacgtcggaggtgttggcggtggtgatgcagcagctgatggaccag
aaccctctccccatgctgctcatgcggaccgtcatccagtccctcaccatgtatccccga
ctagggggcttcgtcatgaacatcctgtcccgcctcatcatgaagcaggtgtggaagtat
cccaaggtgtgggaagggtttgtgaagtgctgccagaggacgaagcctcagtcgtacagc
gtcctcctgcagctcccctccgctcagctcaccagcatgtttgagcgctgcccagaaatg
agggagcctctgctgcagcacgtgcactcgctcacgccccaccagcaagctcacatacct
acctccatcatgacggtgctggaaggagaaaagaagccagacgagcctgtcatggagagc
gagttggaaccactgtctgcagcagttgaagagcaggttcctgactcgccctctcaggag
acgtcagtccagcaggtgaccgacgtgaaggaggatgaagaaccgatggagcaggaagaa
tcgactccagtcatacaggaagaaagtgaccccgtttcccaagagaccccaaaggtggat
gtagctgaagaatcaacaatgtcacctgagcgggagtcgcctgaggagctgatggagacg
tcccagcctgaagcatcgccaccccaggagcctgaaaaggacgttgaggctgcttctaat
gagcccgaggctgaaagtgaaaaagaaactgttgaatga
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integrated database retrieval system
