Takifugu flavidus (sansaifugu): 130523184
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Entry
130523184 CDS
T09160
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfs03000
]
130523184
Transcription factors [BR:
tfs03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130523184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130523184
NCBI-ProteinID:
XP_056884201
LinkDB
All DBs
Position
3:17346740..17350044
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AA seq
333 aa
AA seq
DB search
MYSIMMETDLHSSVVPQATNPSNPPGGGGGKCPQDRIKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGSSAGMGGGQRLDSPGGGHAGANPGYAAHVNGWANGGYPGQVAAAAAAAHAM
MQEAQLAYAQPPAHHPHHHPHHHPQHRYDMSALSYSPISNSQSYMSASPPGYGGITGYTH
HQHQSSPVSGAIGGTLGPLVKSEPSVSPPVSAARAPTSCPTGDLRDMISMYLPSGEAGAA
DPGVHSRLHVLHTQHYQGSGSTPVNGTVPLTHI
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatcatgatggaaacggacttgcactcctcggtggtgcctcaggccaccaac
ccctccaatccgccgggaggaggtggcggcaaatgcccccaggatcggatcaagagaccc
atgaacgctttcatggtgtggtcccggggccagaggaggaaaatggctcaggagaacccc
aaaatgcacaattcggagatcagcaagcgtctgggcgcagagtggaaggtgatgaccgaa
gcggagaagagacccttcattgacgaggcgaagcgcctccgggccatgcacatgaaggaa
cacccggactacaagtaccggccgcggaggaagaccaagacgctgctgaagaaggacaaa
tactcgctggcaggagggctcctcggctcctccgctgggatgggcggcggacagcggttg
gacagcccaggaggcggccacgcaggggccaatccgggctacgccgcacacgtgaacgga
tgggcgaacggcgggtacccgggtcaagtggcggctgctgcggccgctgcgcacgccatg
atgcaggaggcgcagctggcgtacgcgcagccgcccgcacaccacccgcaccatcacccg
catcaccacccgcagcacaggtacgacatgagcgccttatcgtacagccccatctcgaac
tctcagagctacatgagcgcgtctccgcccgggtacggcgggatcaccgggtacacccac
caccagcaccaaagctcgccggtgtccggcgcgattggagggactttagggccacttgtg
aaatcggaacccagcgtgagcccacccgtttccgccgcccgcgcaccgacgtcgtgcccc
accggagacctgcgggacatgataagcatgtatctcccgagcggggaggcgggggcggcg
gaccccggcgtccacagcagactgcatgtcctccacacgcagcactaccagggcagcggc
tccactccggtgaacgggacggttcctctcactcacatttaa
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