Takifugu flavidus (sansaifugu): 130524067
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Entry
130524067 CDS
T09160
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs04510
Focal adhesion
tfs04512
ECM-receptor interaction
tfs04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130524067 (col2a1b)
04518 Integrin signaling
130524067 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130524067 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tfs00536
]
130524067 (col2a1b)
Glycosaminoglycan binding proteins [BR:
tfs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130524067 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
130524067
NCBI-ProteinID:
XP_056885779
LinkDB
All DBs
Position
4:complement(7565270..7592548)
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRIVLLLVASQVCLLTVVRCQEEDDQATLSCMQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCRNPEIPFGECCPICAADQSPPIGVPGAKGQKGEPGDITDVVG
PRGPAGPMGPSGEQGPRGPRGEKGERGSAGPRGRDGEPGTPGNPGNPGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGDAGEPGAA
GPMGPRGPPGPSGKAGEDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYSGID
GAKGETGAVGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAHGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPA
GLQGPPGQQGEEGKRGPRGEPGAAGPIGPPGERGAPGNRGFPGQDGLAGSKGAPGERGTS
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGASGEPGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGLAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGASGTTGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPHGSLGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGEKGETGPAGPSGAPGTRGTPGDRGETGSPGPAGFA
GPPGADGQPGIKGEQGETGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGANGNPGPAGPAGSPGKDGPKGIRGDGGPPGRQGDAGLRGPAGPPGEK
GDAGEDGPVGPPGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGTGGDR
GPPGPVGPPGLTGPAGESGREGNPGSDGPPGRDGATGIKGDRGDTGPAGSPGAPGAPGAP
GPVGQTGKQGDRGESGSQGPAGAPGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPAGPRGPPGPVGPSGKDGAFGLPGPIGPPGPRGRSGET
GPAGPPGNSGPPGLPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVYCD
METGETCVQPKPSSIPRKNWWTSKSKDRKHVWFSETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVLED
GCTKHTGQWGKTLIEYRSQKTSRLPIVDIAPMDIGEAHQEFGVEIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggattgtactgctacttgtagcatcccaagtgtgtcta
ttaaccgttgtgagatgtcaggaagaagacgaccaggccactcttagctgtatgcaggat
ggacagcgctatagcgacaaggacgtgtggaagcccgagccttgtcgcatctgtgtgtgt
gacactggaaccgtcctgtgcgatgaaattgtctgcgaggagctaaaagactgccgcaat
ccagaaatcccattcggagagtgttgccccatctgcgcagctgaccagtcgccacccatc
ggagtacctggagcaaagggtcagaaaggtgaaccaggagacatcactgatgttgtggga
ccgagaggaccggccggccccatgggcccatctggagaacaaggaccccgcggaccaaga
ggagagaagggagagaggggaagtgctggccctcgtggcagagatggtgagcctggcacc
cctggaaaccctgggaacccaggacctccaggacctcccggccctcctgggctcggtgga
aactttgctgctcagatggccggtggtttcgacgagaaggctggcggtggcgcccagatg
ggtgtgatgcaaggaccaatgggccccatgggtcccagaggaccacctggaccatccgga
gcccctggcccacaaggtttccaaggcagccctggagacgcaggagagcctggagcagct
ggacccatgggtccccgtggccctcctggaccctctggaaaggctggagaagatggtgag
gctggaaaacctggcaaatcaggtgagcgtggacctactggacctcagggagctcgtgga
ttcccaggaactcctggcctgcctggaatcaagggacacagaggttactctggtattgat
ggtgcaaagggagagactggagccgtcgggtccaagggtgagtctggtgccccaggagaa
aatggagcccctggaccgatgggacctcgtggtttgcctggcgagagaggccgtcctggg
cccagtggtgttgccggtgcccgtggtaacgatggcctgcccggtcctgctggtccccca
ggccctgtaggtccatccggtgctccaggtttccctggctctcctggttctaaaggagaa
gcaggtcctacgggtgctcgtggacctgagggggctcagggaccccgtggagagtctggc
acgcctggatcacctggaccctccggagcctctggaaaccctggtactgacggaataccc
ggagctaaaggatcagctggtgctcatggtattgctggtgctcctggtttccccggccct
cgtggaccacctggacctcagggagcaactggaccactcggacccaaaggaacatctgga
gatcctggtattgcaggattcaagggagaagctggacccaaaggagagattggacccgct
ggtcttcaaggacctcccggacaacaaggtgaagaaggaaagagggggcccaggggtgag
cctggtgctgctggacctattggaccacctggagagagaggagctcctggtaaccgtggt
ttccccggtcaggatggtctggctgggtcaaagggagcccctggggagcgcggaacctct
ggtgccagtgggcctaaaggtgcaaacggtgaccctggccgtcctggagaatctggtttg
cctggtgccagaggcctgaccggacgtcccggggatgccgggcctcaggggaaagttgga
ccttctggagctcctggtgaggatggacgtcccggacccccgggcccccagggagcccgc
ggacagcctggtgtcatgggattccccggtcccaagggagcgtctggtgaacctggcaag
tctggggagaaaggtctggctggagcgcctggtctcagaggtcttcccggcaaagatggc
gaaaccggcgccgccggaccccctggccccgctggtcttgctggtgagcgaggagagcag
ggacagcctggtccctcaggtttccagggtctgccaggacctcctggccccccaggagag
ggcggcaagcctggagatcagggtgtccctggagaggctggagcctctggtaccaccggg
ccccggggggagcgcggattccccggcgagagaggagctgccggtccccagggtctgcag
ggccctcgaggtcttcctggaactccaggaactgatggacccaagggagccatcggtcct
cacggctcccttggagctcaaggaccccccggtctgcagggtatgcccggagagagagga
ggcgccggcattcccggacccaaaggagacagaggcgacctcggagagaaaggccccgag
ggtgctccaggcaaagatggtgcccggggtcttactggtcctattggtcctcctgggccc
tctggtcctaatggcgagaagggtgaaactggtcccgcgggtccttctggagctcctggt
acccgtggtactcctggtgaccgaggtgagaccggatctcctgggcctgcaggatttgct
ggaccgcctggtgctgacggtcagcctggaatcaagggcgagcagggagagactggacag
aagggagacgccggtgccccaggaccccaagggccctctggtgctcctggacctgctggt
cctacgggtgtttctggacctaaaggcgcccgtggagctcagggacctcctggtgccact
ggtttccccggcgctgctggtcgagtaggaccccccggtgctaacggtaatcctggacct
gctggtcctgccggttctcctggtaaagatggacccaagggcataaggggagatggtgga
cccccgggtagacagggtgatgctggccttcgaggtcccgctgggcctcctggagaaaaa
ggagatgctggcgaggacggtccagttggtcccccaggcccctcaggccctcagggtttg
ggtggtcagcgcggtatcgtcggtctgcctgggcagcgtggagagagaggtttccctggt
cttcctggaccttctggtgagcctgggaaacagggagctcctggtaccggtggagaccgt
ggaccccctggacccgtcggaccgcccggtctgaccggtcctgctggagagtccggtaga
gagggaaacccaggatctgacggtcctcctggaagagacggtgcgactggaatcaagggt
gatcgcggtgacaccggtcctgctggatcacctggtgctccaggcgcacctggtgcaccg
ggtccagtcgggcaaaccggcaagcagggagacagaggagagtctggttcccaaggacct
gctggagccccaggaccagctggagccagaggaatgccaggacctcaaggaccccgtggt
gacaagggtgagggtggagagtctggtgagagaggacagaagggacaccgaggtttcaca
ggtctgcagggtcttcccggacctccgggccaagctggagatcagggtgccactggacct
gctggacctgctggaccaagaggaccgcccggacctgtcggcccctcaggaaaggacgga
gcatttggtttgcctggacccatcggacctcctggaccacgtggtcgaagtggagaaacc
ggtcctgccggtccccctggaaactctggaccacctggtcttcctggaccccctggtcct
ggcattgacatgtccgcctttgccggactgggtcagaccgagaagggtcccgaccctctc
aggtacatgcgggccgaccaggcctctggaaacctgcggcagcacgacgccgaggtcgat
gccacgctcaagtctctcaacaaccagatcgagaacatccgcagccccgagggatccaag
aagaaccctgctcgcacctgcagggacctgaagctctgccaccctgactggaagagcgga
gagtactggatcgatcctaaccagggatgcaccgtcgacgccatcaaggtctactgcgac
atggaaacgggagaaacctgcgtccagcccaagccatcaagcatcccgcgcaagaactgg
tggaccagcaagagcaaggaccgcaaacacgtctggttcagcgagacaatgaacggagga
ttccacttcagctacggcgacgacagcctggcgccaaacaccgccgccatccagatgact
ttcctgaggctgctctccaccgaggcctctcagaacctcacctaccactgcaagaacagc
gtggcctacatggacgcctctacgggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgttggaggac
ggctgcacgaaacacacaggacagtggggcaagacgctgatcgaatatagatcgcagaag
acctctcgcctgcccatcgtggacatcgcccccatggacattggcgaagcacatcaggag
ttcggagtggagatcggcgcggtctgcttcttgtaa
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integrated database retrieval system
