Takifugu flavidus (sansaifugu): 130525454
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Entry
130525454 CDS
T09160
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130525454 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130525454 (ddx3xa)
03041 Spliceosome [BR:
tfs03041
]
130525454 (ddx3xa)
03036 Chromosome and associated proteins [BR:
tfs03036
]
130525454 (ddx3xa)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130525454 (ddx3xa)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130525454 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
130525454 (ddx3xa)
Spliceosome [BR:
tfs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130525454 (ddx3xa)
Chromosome and associated proteins [BR:
tfs03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130525454 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
130525454
NCBI-ProteinID:
XP_056888276
LinkDB
All DBs
Position
1:15082381..15095986
Genome browser
AA seq
718 aa
AA seq
DB search
MSHVVVDGQHCLDQQIAALDLNADGQGGGTNRRYIPPHLRNKDAAKNAGNGYSTGRQCGY
SVGSINSYSSGWDGGRSNGFVNGYHDNRTNGGFGGRGPPRADRGGRGAYRGNRGGGSFNQ
PMQNAGFGNYDNKDSNWTGPQRDPAYNSFGGRSDRSKSFNDRGAGSRGRFERGGFSGGGN
SRWSDEAKEDDWSKPTASNERLEQELFSASNTGINFEKYDDIPVEATGANSPSHIDCFQD
VDMGEIIMGNIELSRYTRPTPVQKYAIPIIKGKRDLMACAQTGSGKTAAFLLPVLSQIYT
EGPGDALQAIKNSGQENGRYGRRKQFPIALVLAPTRELALQIYDEARKFAYRSRVRPCVV
YGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQ
IRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVV
WVEEVDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYREGYACTSIHGDRSQRDR
EEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL
ATSFFNDKNSNITKDLLDLLVEAKQGIPTWLESLAYEHQHKSNTRGRSKRFSGGFGARDY
RQSPGGAGSFSNNRTGRSSGGHGGNRGFGGGGFGSNFYSSDGYGGNYSHSGSVDWWGN
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgatggtcaacactgcctagatcagcagattgctgccctagac
ttgaatgctgatggacaaggtggaggaaccaacaggcgatacattccacctcatctgaga
aacaaagatgctgcaaaaaatgcaggaaatggttattccactggtagacagtgcggttat
tcagtgggatcaataaattcctattcatctggatgggacggtggaagaagcaatggcttt
gtgaatggttaccatgacaatcggacaaatgggggctttggaggacgaggacccccgcgt
gctgacagaggtgggcgtggtgcctaccgtggtaacaggggaggaggctcttttaatcag
ccaatgcaaaatgcaggatttggcaattatgacaacaaagacagcaactggacaggacct
cagagggaccctgcctacaacagctttggaggacgttctgatagatccaagtccttcaat
gaccgtggtgcaggatcaagaggaagatttgagcgtggaggtttttctggtgggggaaat
tctcgctggtcagatgaggccaaggaggacgactggtccaaacccactgctagcaatgag
cgcctggagcaagaacttttctctgctagcaacactgggatcaattttgagaagtatgac
gatatccctgtagaggccactggagccaacagcccatcccacattgattgcttccaagat
gtggacatgggagagattataatggggaatatcgaactgagccgctacactcgacccaca
cctgtccagaagtatgccattcccatcatcaaaggcaagagagacctgatggcttgtgct
cagactggctctggtaaaactgctgcattcttgctgccagtactgagtcagatctacaca
gagggacctggtgatgctctgcaggccattaagaacagtggccaggagaatggaaggtat
ggacgccgtaagcagttcccaatcgcacttgtcctggctccgaccagagaactggccttg
cagatctacgatgaggcaagaaagtttgcatatcgctcacgtgtgcgtccctgcgtggtg
tatggtggcgctgacatcggccaacagatcagggaattggagagaggctgtcacttgctt
gtagccacgcctggacgtctggttgacatgatggaaaggggcaaaattggtctggactat
tgcaattacctggtcctggatgaggcagaccgcatgttggatatgggatttgaaccacaa
attagacgcattgttgagcaagatacgatgccgcccaaaggcatcagacagactatgatg
ttcagtgccactttcccaaaggagatccagattctagctcgtgactttctggaggactac
attttcctggcagtgggtcgtgttggttccacatcagaaaatattacacaaaaggtggtc
tgggtagaggaagttgataaaaggtcattcctccttgacctgcttaatgccacaggcaaa
gactctttgacgttggtctttgtggaaaccaaaaaaggtgcggattccttggaagatttt
ctttaccgtgagggttacgcttgcaccagcatccacggagatcgttctcagagagacaga
gaagaagctctgcaccagttccgttctgggcgttgccccatcttagtggctacagctgtg
gctgcacggggtctggacatcagcaatgtgaagcatgtcatcaactttgatttgcccagt
gacatcgaggagtacgttcaccgtattggccgtacaggacgtgtaggaaatcttggtctg
gccacatcattttttaatgacaaaaacagcaacataaccaaagacttgctggacctcctg
gtagaggcgaagcaggggattcccacctggcttgaaagtttggcctatgagcatcagcac
aagagtaacacccgtggccgttctaagaggttttcaggtgggtttggagcgagagactac
cgtcagtcccctggcggcgctggaagcttcagcaacaaccgcacaggtcgtagtagtgga
ggccacggaggaaaccgtggctttggtggaggtggctttggtagcaacttctacagcagt
gatggctacggaggaaattacagccactctggtagtgtggattggtggggcaactag
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