Takifugu flavidus (sansaifugu): 130526079
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Entry
130526079 CDS
T09160
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03013
Nucleocytoplasmic transport
tfs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130526079 (upf3a)
03015 mRNA surveillance pathway
130526079 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130526079 (upf3a)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130526079 (upf3a)
mRNA cycle factors
P-body specific factors
130526079 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
PagP
Motif
Other DBs
NCBI-GeneID:
130526079
NCBI-ProteinID:
XP_056889430
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All DBs
Position
1:13863724..13867579
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AA seq
461 aa
AA seq
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MRSEKEPMTVGKEKSVVEIQFRDIPGEQENTSNNTKQKEEKKEVFTKVVLRRLPPNLSKD
QLEEHLSPLPPFDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENISCDEEKSMANPETLLGEI
EAKTRELIARRTTPLLEYIKNKKIEKQRLREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKDIKIKLLKKSDREEDVDSDRVKDKSDNGETDRGKWDKTGGQMKSK
DSKEKGQADSDKEQREQHSRRQREKDHRGKDDERKRQRHHYDFDKFMRHKEETRWGKGYC
HDRAKKDGHHHAFSYCPDGGDKLGKDDREDLGNRKERLRNKVSEKDRPAMQLYQPGARNR
KRMSSAGKGFDCIPVNPPAVTDYCYEVATLETGLEKNKDVQ
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaaccgatgactgtggggaaggaaaaaagcgtcgtggagatacag
ttcagagacattcccggagagcaggaaaacacctctaataacacgaagcaaaaagaagag
aaaaaagaggtttttacgaaggtggtgcttcgaagacttccaccaaatctgtccaaagac
cagctggaagaacatctaagtccgctccctccttttgactattttgagttttttccagca
gaccagagtctttacccacacttgttctccagagcgtacatcaactttaaaaaccctgag
gatatcttgttgttcagagaccggtttgatggttacgtcttcattgacaacaagggtcag
gagtatcctgctgtagtggagtttgcccccttccagaaaatttccaagaagaagcttaaa
aagaaagatgccaaagccgggagcatcgaagaagacccagaatacaagcggttcctggag
aatatctcctgtgatgaggagaagtcgatggccaaccctgagactctgctcggagagata
gaggccaagaccagagagctcatagccagacgaacaacaccgctgttggaatacattaaa
aataagaagattgagaaacaaagactgagggaagagaagcgagaagagagaagaagacgg
gagcttgaaaagaaacgacaaagggaggaggaaaagaggaagcgaagagaggaagagaga
cgcaagagaaaggaggcagagaagcaaaagaaattgtctgagaaagatattaaaatcaag
ctccttaaaaagagtgacagggaggaagatgtggattcagaccgcgtgaaggataaaagt
gacaatggggagacagacagaggcaaatgggacaaaacgggaggacaaatgaagtcaaag
gactccaaagaaaaaggtcaggccgacagcgacaaggagcaacgagagcagcatagtcgc
aggcagcgagagaaggaccatcgaggcaaagatgatgagaggaagcggcagcgccaccac
tacgactttgacaagttcatgcggcacaaagaggagaccagatgggggaagggttactgt
cacgaccgcgccaagaaggacggacatcatcacgctttttcttactgtcccgacggtgga
gacaaactgggaaaggatgacagggaggatttgggtaacaggaaagagcgcctccgaaac
aaggtgagcgagaaggatcgccccgccatgcagctttatcagccaggtgcacgtaacagg
aagcgcatgagttctgcaggcaaaggcttcgactgcatccctgtgaacccgccagcagtg
acagactattgctatgaggtggccacgctggaaacaggactggagaagaacaaagatgtg
cagtga
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