KEGG   Takifugu flavidus (sansaifugu): 130526392
Entry
130526392         CDS       T09160                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
tfs  Takifugu flavidus (sansaifugu)
Pathway
tfs03030  DNA replication
tfs03410  Base excision repair
tfs03420  Nucleotide excision repair
tfs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tfs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    130526392 (rfc5)
   03410 Base excision repair
    130526392 (rfc5)
   03420 Nucleotide excision repair
    130526392 (rfc5)
   03430 Mismatch repair
    130526392 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfs03032]
    130526392 (rfc5)
   03036 Chromosome and associated proteins [BR:tfs03036]
    130526392 (rfc5)
   03400 DNA repair and recombination proteins [BR:tfs03400]
    130526392 (rfc5)
DNA replication proteins [BR:tfs03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    130526392 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    130526392 (rfc5)
Chromosome and associated proteins [BR:tfs03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    130526392 (rfc5)
DNA repair and recombination proteins [BR:tfs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     130526392 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    130526392 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_24 AAA_14 RuvB_N ResIII AAA_assoc_2 AAA_16 DEAD DUF815 PhoH TIP49 AAA_7 ATPase_2 AAA_5 AAA_19 AAA_30 DNAX_ATPase_lid nSTAND3 AAA_2 Thioredoxin_6 AAA_25 Glyco_hydro_57 AAA_3 DUF4119
Other DBs
NCBI-GeneID: 130526392
NCBI-ProteinID: XP_056890007
LinkDB
Position
5:complement(4168921..4172064)
AA seq 335 aa
MSSNSKTPLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEETAYNCTGHPLRSD
IANILDWALNKDFTTAYKQILELKTLKGLALQDILTEVHLLIHRVDFPPDIRIGLLIKLA
DVEHRLASGTDEKIQLSSMVAAFQAVRDFVASEAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgtcttccaacagtaaaacacccttacagaagcgaaacttaccctgggtagagaaatac
agaccgcagaaactcgacgatctgatctcccacagagacattctcagcaccattcagaag
tttatcaacgaggacaagctcccacatctcttgttctacggcccccccggaacagggaaa
acctccaccattctggcctgtgccagacagctgtacaaggacaaagagttcaactccatg
gttttagagttaaatgcatcagacgaccgaggtatcgacgtcgtacgtggtccaattttg
agttttgccagcaccaggaccattttcaagaagggcttcaagttggtgattctggacgag
gctgatgccatgacccaggatgcccagaatgcactgcggcgagtgatcgagaagtttaca
gaaaacactcgcttctgtctcatctgcaactacctgtccaagatcatcccagctctgcag
tcccggtgcaccaggttccgcttcggcccgctgtccccagatcagatgatcccccggctg
gagcatgtaatccagcaggaaagcattgacataactccagacggaatgaaggccattgtg
actttatcatcgggcgacatgagaaggtctctcaacatattgcagagcaccagcatggct
tacgggaaggtcacagaggaaacggcgtacaactgcacaggtcaccccctccgttcagat
atagccaacatcctggactgggccctcaacaaagatttcaccaccgcgtacaagcaaatc
ctggaactcaagactctgaaaggtttggccctgcaggacattctaactgaggttcacctg
ctgatacacagagttgactttcctccggatatccgaattggcctgctcatcaaactggct
gacgtggagcacagactggcctcagggaccgatgagaagatccagctcagctccatggtc
gcagccttccaggcggtgagagacttcgtggcgagcgaggcctcgtaa

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