Takifugu flavidus (sansaifugu): 130526649
Help
Entry
130526649 CDS
T09160
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tfs03009
]
130526649 (pdcd11)
Ribosome biogenesis [BR:
tfs03009
]
Eukaryotic type
90S particles
Other 90S particles
130526649 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
UTP6_C
ARM_TT21
TPR_15
DUF2110
ARM_TT21_5th
TPR_16
PilZN
TPR_CcmH_CycH
ARM_TT21_N
TPR_8
TPR_7
PPR
TPR_12
Motif
Other DBs
NCBI-GeneID:
130526649
NCBI-ProteinID:
XP_056890374
LinkDB
All DBs
Position
6:complement(1575078..1585010)
Genome browser
AA seq
1802 aa
AA seq
DB search
MASVEEDFPRGGTVAKPTPSKIVVQRTDVDNLFQSNEESETKKRKGTLKDDGKKIKKPKT
GKEKEETLTLNASAKTVEILHIKNVREGMLLLGCVKDVADFEVTVSLPCGLQGFLSIRNI
SDSYTKMLSEQLDSDDMEDICSLPDLLCPGMIVRCAVAKLDTSKGGNLSIQLSINPKLVN
KALTTSSLNAGMVLSGCVESVEDHGYIVDIGIKGTNAFLPKKKGPNNQEDLKVGQYVTST
VEAVKNEGRVVRLSVSQLNSSQACIRSTQGWNLTNLLPGLLVNATIKKVTKHGLSVSFLS
SFTGQVDFLHMEPKEASSYKEGDEVRACVLYVEPSTRLVALSLHSYLLQPGIRVDPCPPG
DDRVGEVVKSCKMTTVHHMSGAMLELPDKTMAFAHKNHLREPKAQLNENRLLAMPEHTCR
ILDFSLMDNIYFVSLRKSVIDKPFFRYHDLQAGQVVEGTVTVLLAHGMVVHLADHIKGLV
PRTHLSDILLKNPEKKYMEGMKVKCRVLSVEPEHKKLFLTRKKALVESSLPLFRTISDAR
PGCVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQCD
REKAKLLLSFKGVMEGAAEQTAAPKLDCKVGEKLEAKVLKKMPNGLEVAILPEEIRAYLP
TMHLSDHLSNCPLLWECLQEGDSISNLIYINRSHQNITLTKKPTIRWSLEEGVAAKDFSE
IKVGTQLFGWIKNIMPYGVFVEFPYGLVGLAPKSAMADRFISDTKTIYQLGQTVIAKVTN
LDEEKRRFLVTLKISEVISPVGDVLTRLINGLQERKAMTEMSLARDDSELRQQLAALSVG
QRLKLTVNTATDNGATFVSDELHGATIQASKHHVTGMNLVPGQKVTAVILHIDLLSTCVH
VSILSRLLGKKRSLNEGSKYTATVEHINQDFAVIFLDNTAHLTVIQTSSHLNHTDIQELK
LGMSLTVELIEASCEKAQGLPLVAWERSAPKRQNVPSASQKGYCFGEVVQAKVKSVKPTL
IQVTLEDGSTGTVHVSEVMDPKDLCQGFLPTLSVKVGSTVTARVIGGREASSHRLLPFSH
PNFKYTILDLTLIPSKLDKSVALKSVSIKEHLNSYKVGEEITCFVSKFHPDRKVLEVTTH
PGVTGTVELLAMVTNPRNATHPESVFKVGQAVYAKVVERSTKPQRFILSLTGVTKLEKGA
VTLGMVVNIDPQKGLLVKLPFGGMGTVAITDLADAYRPNPLGGYSKNQILRFFLLGNNNG
KWQLSLRPSRLNAEAKTVKDPEILSVDELKEGQIIRGYIKSVEKCGIFIRLSRSIVGRTE
LHHSTKYVCNNHKILSEHLPPSTLITTKILSIDTEEELVSLSLLPKDTGKSDVLPESLGL
PLHLFEEEKTKCEVQKRNNKRKLSESEQVSKKKKKKKSKADGNDSGVEVYFREDDDDEDD
AKKTQSGSIKQETQSSVGLSRLQVAAGFSWDVGLNSLKPLSAVQESESSDEEEPDKSNKA
QKKSRHELEQEKKAAEKALMQREAELMDPGLQPEDAAAFERLLLASPNSSLLWLQYMAHH
LQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFERALQFCE
PMPVYQQLADIYTKSEKMKEAESLYKTMVKRFRQHKAVWLSYGTFLLQRGQSDAANSLLQ
RALKSMPSKESVDVIAKFAQLEFRYGDAERGRTMFDKVLTSYPKRTDLWSVFIDLMIKHG
SQKDVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSVQAVKEKAVEFVESKGVEA
SK
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtggaagaggatttccctcgtggagggacagtagcgaaacccaccccgagt
aaaatagtggtgcagcggacagatgtggataacttgttccagtctaatgaagagtcggaa
acgaaaaaaaggaaggggactttaaaagatgatggaaagaagatcaagaaacctaaaaca
ggcaaagaaaaagaggaaaccctgactctgaacgcatcagccaaaactgtggaaatcttg
catatcaagaatgtgagggagggtatgctgttgctgggttgtgttaaggacgtagcagac
ttcgaggtgacagtcagcctgccttgtggcctgcaaggcttcctcagcatcagaaacatc
tctgactcgtatacaaagatgcttagtgagcagctggattcagatgatatggaggacatt
tgttcactgccagacctcctttgtcccgggatgatagtgaggtgtgcagttgccaaattg
gacacgtccaaaggaggtaaccttagcatccagctgtcaatcaatccaaagctggtcaac
aaggctctcactacaagctctctgaatgctggcatggttttaagtggatgcgtggaaagt
gtggaggaccatggctacattgtagatataggcatcaaaggaactaacgccttcctgcct
aagaaaaagggacctaacaatcaggaagatctgaaagtgggtcagtatgtgacatctaca
gtagaggcagtaaaaaatgaaggacgggtggtccgtctttctgtcagccagctaaacagc
agtcaggcctgtattcggtcaactcagggatggaacctcaccaaccttctgcccggtctt
ctggttaacgctacaatcaaaaaggtgaccaaacatggactgagtgtgtccttcttgtcc
tccttcactggccaggtggactttctccacatggagccaaaagaggcatcaagctacaaa
gagggggatgaggttcgtgcctgcgtgttgtacgtggagccgtccacccgtctggtggct
ctgagcctacacagctacctccttcaaccaggaatcagggttgacccgtgtcctcctgga
gatgaccgcgttggagaggtggtgaagtcctgcaagatgaccacagttcaccacatgtct
ggagccatgctggaactgccagacaaaaccatggccttcgctcacaaaaaccaccttaga
gagcccaaagcccaacttaatgaaaacagactactggccatgcctgaacacacctgcagg
attctggattttagcctgatggacaacatttattttgttagtcttcgcaagagtgtgatt
gacaagcctttctttagataccatgatcttcaggctggtcaggtcgtagaggggacagtg
acagtcctgctggctcatggcatggtggtgcatctggccgaccacatcaagggcctggta
ccacgaacgcacctctccgacatcctcctaaaaaacccagagaagaagtatatggagggc
atgaaggtcaaatgtcgcgtgctgtcagtagagccggagcataagaagctcttcctgacc
aggaagaaggccctggttgaaagctccttgccattgttccgcaccatttcggatgctcgc
cccggctgcgtatcccacggttatattgtctgcatcaaagactttggctgcatagttcgt
ttctacaatgacgtcaaaggtctggtgccgctcagcgagctcagttcagagcccatcagc
cagcccaaggatttcttttatatagggcaggttttgaagactaaagttcttcaatgtgat
cgcgagaaggccaagttgctgctgtcttttaaaggggtgatggagggggctgcagagcaa
accgctgcacccaagcttgactgcaaggtgggggagaagctggaagctaaggtcctgaaa
aagatgcccaacggcctggaggtagccattctccctgaagaaatccgtgcatatcttccc
acaatgcatctttctgatcacttgtccaactgcccgctgctgtgggaatgcttacaagaa
ggagacagcatctcaaacctcatctacatcaataggagtcaccagaatatcacactgacc
aaaaaaccaaccatcaggtggtcgctggaagaaggagtggctgccaaagacttctctgaa
attaaagttggaacacagctgtttggctggatcaagaacataatgccttatggtgttttt
gtagagttcccatacggccttgttggccttgcacccaaatctgccatggctgacagattc
atcagcgacaccaaaactatctaccagctgggccagactgtcattgccaaggtgaccaac
ctggatgaggagaaacggcgtttcctggtcacgctgaagatttcggaggtcatatcccca
gtgggggatgtcctgacccgactgattaatgggcttcaggagaggaaagccatgactgag
atgtcgttagcaagagatgacagcgagcttcgccagcagctggctgcactgtctgtcggc
cagaggctgaaactgactgtaaacacagcaacagacaacggtgccacatttgtgtctgac
gagctgcacggcgcaaccatacaggcgtctaagcaccacgtcacgggtatgaatttggtt
ccaggacagaaagttacggcagtcatcctccatattgaccttctgtccacatgtgtccac
gtgtccatcctatccaggcttttggggaagaagagatccttgaatgaaggatccaaatac
acagcgactgtggagcacatcaaccaagactttgctgtcatcttcctggataatacagca
catctgactgtgatccagaccagcagccacctgaaccacacagacatccaggagctgaag
ctggggatgagtttgacggtggagctcatagaagccagctgtgagaaggcacaggggctc
cccctagtggcctgggagcgcagcgctccaaagcgccagaacgtgccctcagccagccag
aagggctattgctttggcgaagtcgtgcaggctaaagtgaagtcagtgaagccgaccctc
attcaggtcaccttagaggacggaagcactggcactgtgcacgtgtctgaggtcatggat
cccaaagatttgtgccagggattcctccccacattatcagttaaagtcggcagtacggta
accgcgagggtcattggaggacgggaggcctccagtcacagattgttgccattctctcat
ccaaattttaaatacactattttggacctcactctaatacccagcaaactggacaaaagt
gtggccctcaaatcggtttcgattaaagaacaccttaacagctacaaagttggggaagaa
atcacatgctttgtatcaaagtttcaccctgacaggaaggtgttggaagtcaccactcat
cccggtgttactgggacggttgagctgttggccatggtcaccaatccaagaaatgccacc
cacccagaaagcgtgtttaaggtgggtcaggcagtatatgccaaagtggtggaaaggagc
accaaacctcagcgcttcatcctgtcgctcacaggtgtaactaagctggaaaagggtgcc
gttactcttggaatggtggtaaatattgaccctcaaaaaggccttctggtcaaacttccc
ttcggtggcatgggcactgttgctatcactgacctggctgatgcctacaggccaaacccc
ttaggtggatacagcaaaaatcagatactcaggtttttccttcttgggaataacaatggc
aagtggcagttgtctttacgtccatcgaggctgaatgcagaggccaagacagtgaaggac
ccggaaattttgtctgtagatgaattaaaggaaggccagatcatcagaggctacatcaaa
tctgtagaaaagtgtgggatcttcatcaggctgtcaaggagcatcgtgggaagaacggag
cttcaccactccacaaaatacgtctgcaacaaccacaagatcctctctgagcacctccct
cccagcacgctgatcaccaccaagatcctcagtattgacacggaggaggagttggtgagt
ctctctctgcttcccaaggacactgggaagtcagatgtgcttccagagtctctcggtctg
cccctccatctatttgaagaggagaaaacgaaatgtgaggtgcagaagaggaacaacaag
cgcaagctctctgaaagtgaacaggtctcaaagaaaaagaaaaagaagaaatcaaaggcg
gatggcaacgacagtggagtagaggtgtacttcagagaggatgatgatgatgaggatgac
gctaaaaaaacacagtccggatccataaagcaggagacgcagagctctgtggggctgtcc
aggctgcaggtagcagcaggcttctcctgggacgtgggactgaattccctcaagccccta
tccgcagtgcaggagagcgagtccagcgacgaagaggaacctgacaaaagtaacaaggcc
cagaagaagtctcgccacgagcttgagcaggagaagaaggcggcagagaaggccctgatg
cagcgggaggccgagctgatggatccaggcctgcagcccgaggacgcagccgcatttgag
cgtttgttgctcgcgtcccccaacagctccctgctgtggctccagtacatggcccatcat
ctacaggccacccagattgagcaggcccgtgcggtggcagagagggccctcaaaaccatc
tccttcagagaagagcaggaaaagctaaacgtgtgggtggccctgttgaacctggagaac
atgtatggcaccgaggagagcctaaagaaggtgtttgagcgggcactgcagttctgcgag
cccatgcctgtgtaccagcagctggccgacatctacacaaagtctgagaagatgaaggag
gcagagagcctgtataagacgatggtgaagcgcttccgtcagcataaggccgtgtggctg
agttacggcacgttccttcttcagcggggtcaaagtgacgctgccaactctctcctgcag
agggcgctaaagagcatgccttcaaaagaaagtgtagatgtgatcgcaaagtttgctcag
ctggagttccggtacggcgatgcggagcgaggtcgcaccatgtttgacaaagtcctgaca
agctacccaaaacgcacagacctgtggtccgtctttattgatcttatgattaaacatggg
tcacagaaggatgtcagggagctttttgatcgcgtgatccatttgagtgtttcggtgaaa
aagatcaaattcttcttcaagcgctacctggagtacgagaagaagcacggcaccccgcag
agcgtccaggcggtcaaagagaaggccgtggagtttgtcgaatccaagggcgttgaagct
tccaaatga
DBGET
integrated database retrieval system
