Takifugu flavidus (sansaifugu): 130526972
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Entry
130526972 CDS
T09160
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03030
DNA replication
tfs03410
Base excision repair
tfs03420
Nucleotide excision repair
tfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130526972 (rfc1)
03410 Base excision repair
130526972 (rfc1)
03420 Nucleotide excision repair
130526972 (rfc1)
03430 Mismatch repair
130526972 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfs03032
]
130526972 (rfc1)
03400 DNA repair and recombination proteins [BR:
tfs03400
]
130526972 (rfc1)
DNA replication proteins [BR:
tfs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130526972 (rfc1)
DNA repair and recombination proteins [BR:
tfs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130526972 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_30
Rad17
RuvB_N
AAA_18
AAA_14
BRCT_2
AAA_17
RNA_helicase
AAA_33
AAA_7
AAA_16
nSTAND3
AAA_19
NPHP3_N
NTPase_1
Motif
Other DBs
NCBI-GeneID:
130526972
NCBI-ProteinID:
XP_056890951
LinkDB
All DBs
Position
6:10002106..10010203
Genome browser
AA seq
1157 aa
AA seq
DB search
MMDIRRFFPPSSSKHAAQRSPQNRDVKTDKKKLLSSDDDAKKKNQNASKVGGSKPQEKRR
NSGKKKRKKIAIIDSDSEDEDLVKKSKKSPKGKQKVSKKQSPPRKDPVQYVSETDSDSDT
FQTLKEVSKGKSTKSDVNGPQKGVKMGMKSPVTPASKVATSPVTPKSTQPPQPKQTPTSA
LDYFGKGTVQRSEKKLVASVKRKAPTQDSIELMSDKQRDDDMELEKQIHEDEEFGRTLAM
LDEEPQAKKARQGSEEETATSHKQNCSDSAVEKGGSLAKKGQRINTTQNASGPSPKKSPA
PVKTSSKLAMMKKRDESPGSKMTISPRKIKFSPRKEPIISSISDKKVAHKAETESASVKF
SPRKQESTTTSPEDSEKKKVNATAYRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGV
LESMERDETKSLIERYGGKVTGNISKRTTYLVQGRDSGVSKLEKAESLGTKILDEDGLLE
LIRTKPGKKSKYEIAAEAEIKASKTRTPSKASKSTPTAQKISPSKGNSTSPHTPSPSKTS
LAQGHTARTREARTPSGRGSAQTVRRELGLSSSNTSSSPPDTSVPPQTGGEVALLWVDKY
RPRSLKAVIGQQGEQSCANKLLRWLQNWHRHHAGGALKPPAAKFGKFGGKDDGSGYKAAL
LSGPPGVGKTTTASLVCEELGFSYVEMNASCTRSKNNLKDVVAESVNNTSIENFYKGTSQ
TVSNKHVLIMDEVDGMAGNEDRGGIQELIGLIKSSKIPIICMCNDRNHMKIRSLANYCFD
LRFQRPRVEQIKAAMMSIAFKEGINIRPPALNEIILASNQDVRQVMHNLSMWSATDKVMS
YDQCKSDAARARKDMKMGPFDVCRKVFAAGEETARMSLIDKSDLFFHDYSLAPLFVQENY
LNVRPIAAGGNLKSHLMLISKAADSISDGDLVDKRIRSGQNWSLLPTQAIYASVLPGELM
RGYMSQFPSFPSWLGKNSSAGKHSRIVQELASHMSLKTMSSRSAVNLDYLHYLRHALLSP
LQRHGAEGASEAVQMLDDYHLIKEDVDSIMEISVWGNQPDLYSKLDPKVKAAFTRAYNKE
VHLTPYSLLAVKKNRRGGESEVGGVDMDNQAHESEEDGENLQTDAMIKQKKVKVGKQTKE
KEDSGKPKGKAKAKTKK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgatggacatcagacggttcttccccccgtcttcgtccaagcatgcagcgcagcggtcg
ccccagaacagagacgtcaagacggacaagaagaagcttctctcctcggatgacgatgcg
aaaaagaaaaatcagaatgcatccaaggtcggaggctcaaaaccgcaggagaaacgcaga
aatagtgggaaaaagaagcgaaagaagatcgctattatagattcagactctgaggatgag
gacctggtaaagaaatcaaaaaaatcacctaaagggaaacagaaagtgagcaagaaacag
tcccctcctagaaaagatcctgtgcagtatgtctctgaaacagattcggacagtgacact
tttcaaaccttaaaagaagtctctaaaggcaagtcaacaaagtctgatgtcaatggccct
cagaagggagtcaagatggggatgaagtctccagtcacacctgcgagtaaagtcgcaacg
tcccctgtcactccaaagtcaactcaacctcctcaaccaaaacaaacacccacatctgcc
ttggactattttggcaaaggtactgttcagcgctcggagaagaaactcgttgccagcgtc
aaaagaaaagcgccaactcaggacagcattgaactgatgagtgataagcaaagggatgat
gacatggagctggaaaagcagatccatgaggacgaggaatttggcagaacacttgcaatg
ctggatgaggagcctcaagcaaagaaggctcgtcaaggctctgaggaggaaactgccaca
tctcacaaacagaattgctcagattctgctgttgaaaaagggggcagtctggcaaaaaaa
ggccagcggatcaacacaacccagaatgcgagcggcccgtctccaaaaaagagtccagcc
ccagttaaaaccagctctaaactggcaatgatgaagaaaagggatgaatcgccagggagc
aaaatgaccatttcacccagaaaaataaagttttctcccaggaaggagccaatcatttca
tcaatctcagacaagaaggtcgcccacaaagcagaaactgagtcagcctcagttaagttt
tctcccaggaaacaagagagtacaaccacaagtccagaagattcagagaagaagaaggtc
aatgctacagcttataggaattacctcaacagagagggtcccagagctctgggatcaaag
gaaatcccgcagggagcagagaactgcctggagggctgcgtgttcgtgctgaccggcgtc
cttgagtccatggagcgggacgagaccaagtccctcattgagcgctacggaggcaaggtg
acgggcaacatcagtaagaggacaacctacctggttcagggtagagacagtggagtctcc
aaacttgagaaggcggagagtttgggcacaaagatcctggatgaggacggtctcttggag
ctgatcagaaccaaaccaggaaagaaatccaagtacgagatcgctgccgaggctgagatc
aaagcctcaaagaccagaactcccagcaaagcctccaaaagcacccctacagcccagaag
atctctccttcaaaaggtaattccacatctccccacacccccagcccatcaaagaccagc
ctggcccaaggccacacagccaggacaagagaggctcgaacgccgtctggaagagggtca
gctcagaccgttcgcagggaactgggcctctcctcctccaacacgtcttcttcacccccg
gatacatcggtcccgccacagacagggggggaagtggctctgctgtgggttgacaagtac
cgcccgcggtctctgaaggctgtgatcggtcagcagggagagcagagctgtgccaataag
ctgctccgttggttgcagaactggcaccggcaccacgctggaggagctctgaagcccccc
gcagcaaagtttggaaaatttggaggaaaagatgacggatcaggatacaaagctgctctg
ctatctggacctccgggggtgggcaagaccaccacagcttccctggtctgtgaggagttg
ggcttcagctatgtggagatgaatgccagctgtacgcgcagcaaaaacaatctaaaggat
gttgttgcagaatcagtcaacaacaccagcatcgaaaacttctacaaaggcacatctcag
acggtgagcaacaagcacgtgctcatcatggacgaggtggacggcatggccggcaacgag
gaccgcggaggaatccaggagttaattggcctgatcaaaagttcaaagattcccatcatc
tgcatgtgcaacgatcgcaaccacatgaagatccggtcgttggcaaactactgttttgac
ctgcgcttccagagaccacgagtggaacagataaaggcagccatgatgtccatcgctttc
aaggagggaatcaacatccggcctccggctcttaatgaaattattctggcctccaatcag
gatgtgcgacaggtgatgcacaacctgagcatgtggtcggccacagacaaggtgatgtca
tacgaccagtgcaagtcggacgctgccagggctcgcaaagatatgaaaatgggtccattc
gacgtctgcagaaaggtatttgctgctggagaggaaactgcccgcatgagcctcatcgac
aagtccgacctcttcttccacgactactcgctagcgccgctctttgtccaagaaaactac
ctgaacgttcgtccaatagctgctgggggtaacctgaagtcccacctgatgctgatcagc
aaggcagctgactccatctctgatggagatctggtggacaaacggatccgctcggggcag
aactggtcgctgctgcccacccaggccatctatgccagtgtgctgcctggggagctcatg
cgaggatacatgagccagttccccagttttccgagctggctcggcaagaactcctccgct
ggtaaacattcccgcatcgtgcaggagctggcctcccacatgagtttaaagaccatgagc
agcaggtcggcggttaacctggactacctgcactacctgcgccacgcgctgctgagcccg
ctgcagcggcacggggccgagggcgccagcgaagccgtgcagatgctggatgactaccac
ctcatcaaggaagatgtggacagcatcatggagatcagcgtttggggtaatcagcccgac
ctctactccaaactggaccctaaggtgaaggcagcattcacgcgagcttacaataaagaa
gtccatctgacgccatactcgctgcttgcggtgaagaagaaccgtcgtggtggagagtct
gaagttggaggcgtggacatggacaaccaagcgcatgagtctgaggaggatggggagaac
ctccaaactgacgctatgattaaacagaagaaggtcaaagtcggcaagcagacaaaagag
aaagaagattctgggaaacccaaaggcaaggccaaagccaagaccaagaagtag
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integrated database retrieval system
