Takifugu flavidus (sansaifugu): 130527087
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Entry
130527087 CDS
T09160
Symbol
dchs2
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-23
KO
K16507
protocadherin-16/23
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tfs04515
]
130527087 (dchs2)
Cell adhesion molecules [BR:
tfs04515
]
Cadherins
Cadherin related
130527087 (dchs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Fibulin_C
Cadherin_4
RET_CLD1
CADH_Y-type_LIR
PepSY
Motif
Other DBs
NCBI-GeneID:
130527087
NCBI-ProteinID:
XP_056891196
LinkDB
All DBs
Position
6:4813070..4832478
Genome browser
AA seq
3286 aa
AA seq
DB search
MSAGGMGATLLRTLVLWSLYAHSLAQVFNLTLSVKEGLPAGTIVGDLGAVLSTPSTGFFI
SESRDSDVFRDLEIDADTGIISTAVVLDRESRHQYDFVAATLTGEMIRVRIEVKDVNDHS
PVFPSEGFNLEISEASPQGSCFKLEGAKDEDEDEFGIQGYRIRESEMDDLFHLDYHRSGS
EKHLSLDLLLMSRLDREAQDFYSLTVEAFDGGVPPRTGTLQLNIRVLDENDNPPVFNQTE
YHASVPEDAPLMSPVCQVHATDLDLGDNGRITYEINRRQSDPNEVFSINRTSGVVYLNKP
LDYEAQVFHELIVSATDNGAQPEYSSAFVGVKVLNINDHSPSISVLFLSETGEATVSEAA
GIGDFVARISVSDPDFQEEMVTVTLEGGDGKFTLKQTDDFLYALCVSADLDREEKDLYEL
KVRASDLGSPPLSSEVVFLLRVTDTNDCRPVFEKDAYAVSVPEDAPQGSSLIRVQTRDAD
EGANAAVRYSILRANQDGLVSIEPESGLITTAAPLDREALEQLWFLVVAADGGEPSLSST
ATVTVLVLDVNDNEPVFQQQLYNATVPEHSGVGSCFLQVVATDADSREFGTLLYSLSDGF
DGQERHPLFHVQPQTGELCVSQDIDRDLGQTVHDILIRAEDPGGLSAQTYVHVEVEDLND
HAPVFNPDEYTVSISSHAQPGAELLNVIATDRDSGRFGQVTYDIIPGDGSGLFDVDPQTG
TLTLTSPLGDLGAARVKLLVTAQDGEGVTSARPAEVTVNVLHSAQAPAVFQRSRYTFTVP
EDAPPGTSVGTVEAMTPADFSASVSYRISSGDPKGFFSIHPKSGLISSIKPLDHELQPNV
LLVLQSYTDTSPVYSTTQVNIAITDINDNAPVFLRTRDAISVSQNTLPGTVLFIAHAHDD
DSGANGRVRYHLRNNRYGMFGIDRDLGAVTLNQSLLVSSQQSYNLEIVAEDGGEPAQSSW
LSLTVSVDRSAAEDSLAFETLVYQVEIGEGYRKDSRVIQVRAHWSRRSHLSTSGLTYSLE
TEAGSPPAPFRIHPKSGWLYLSHNLDYETETTFRCRVLARASPANATATAELTVLVLDVN
DNAPVFSSEVYHFTVSEAPSPQGLVGTVSAVDKDSGINAQLSYILLSDGKFFRINAKTGE
IINWVALDREHHSQHTLKVMVTDQGHARLNATATVHILVTDTNDNPPQFTHLPASKEVNV
QIWAEVPAGSLVTNMFAKDLDAGENGTVALSLVPEEAGPSHFVIDGETGDISTTEHFSQN
SRSFYTLRICARDGGAPPLEDIAVVHVQVHGLEAPNGRADYPLVKRFVVREDAEPATVIG
SAGVPNKGRFHYSISEGDGSVHFGIDGSSGDIYISRPLDYEAATQYFLVVRAEDAGLAPG
ANVSVLVSVMVEDVNDHTPWFPDKLVQLGLSEDAAVGSLVFAFQARDGDGTLPNSAVRYD
LTYDPKVADSSSHFPFEIDPFTGSLTVATPLDREAAPSFAFTVTATDQASRKEERKQAAV
AAQVFLLDVNDDRPVFRSAVSVQVMEDAEAGSLLHRFVSKDGDEGGNGLVSYTILTGNTK
GVFTLEEKTGLLFLSAPLDYEAQRLHHLTIRAADHGLPPLSSTQTFTVEVGDVNDRSPVF
SQNIYNASVAENRDPGEPVVRVSATDDDSEENAVVWYSLLPGPGYELFSINPHTGLITTA
SYLDREQQPHFSLRVQARDSGSRPLSATATVLCSVLDDNDNPPRFMQSSFRVSLPENLPP
GAIHTAQASDPDLGENGTIHYSIAGEDGAGCFVVNSRSGVVSTTKVLDREEKQNYTLTIW
ARNYGPAPLSSSTQLQLVLLDQNDNAPSFSRKSYQASVSEGLPPGAEVLRLSAFDPDEGP
NGHVTYSLTEDSSHGAFSVDSLTGAIRTTRSLDREGRAQYTIRAVATDGCXAGPLHSVAP
VTILVEDVNDNVPVCDQNPINGWVSMRTLPNQIVATVTAEDGDQGENGTLLFALPDEENL
FAINSETGEISLRRRVRAGFSGRKLEVMVSDRGRPVLTSACLVLIHLKGDQEGLHFTNNV
YNATIQENSRAGTWITKVEATGRADSRQSVVYSIFSGNEHSLFSINHHTGEIRVQKDYAL
DFELSPHIHLVVLAENGLQTTHCRVSISLLDVNDNAPRFDYSSYRTAVWEGQAHNTYIMQ
VFASDADGGINGQIEYSIVSGDPNQAFILDSVRGILATNVLLDREITPSYKLVLQAADKG
EPPLSSTATVRVQVVDVNDNIPAIPPMEPVVIAENRPAGHTVTQVTANDVDLSTTITYSL
SAEGSTRSPFAIDQYTGVVTLTQALDYEEQAEYTLTVLASDSLHQTSGEVKVQVLDVNDN
APVFSKDSYQVDLSELAAADTLVLSVSATDRDSGLNGEITYRLLSSPSQGFYIQADSGSV
FINKPIKEITNGNLIHLLVEARDGGDPALSSITSIDVQVLDTNDHVPMFHQEVYSLTVPE
DTPTDATLLTLSAEDRDWSPENTHLDYAIIQGNEERRFSLEVRLVQVENQWRNVGKLVLC
NPLDRETTESYVLTVSVADRGIPPLNSSAVVMVTVADCNDNAPVFSSTEYHTQVRENSAV
GTHLVQVTAQDPDLGPNGSLKFDIISGNGKGHYKLDPDSGLLVVNQSLDYEQDSKYILTI
RASDGGEFSEKRRVAFTVVFITVLDENDNSPHFLFPVVNCSVLENLPAFTHTCSVHAVDN
DLGPYGQVTYSILSSCFLDYDSGSPEKKEAFAIDPLTGDIHTRQTFDYERENEYCFVVEA
QDKGGKSATVRVQVSIKGVDEFSPVFTQKQFHFLLPENSKREDVVGFVTAMDHDRGVDGM
VEYSLASSSPFFSVNRTTGSIFVSEPVYRRRGSHGEDLVKLVVSAGSPKLSSRTTNCVVF
INISSSAEALTGAPLDTHMFGLSISLVVILVVLLIFVGLVLRYKTKEVALKKAAAMAANL
NCGTGSFHRSNSLNQSPITLQEIKRPSIVVPKRQVSNPYSQSDSSGRGSAEGEMAEDQEI
RWINEYPCRRGDESVQGKPVPDISHSALRQDDISCHSVSVAPEHVMNKRLSSEMASTESL
YHFKEEGGGEGLLPLLPAIVRMKDLEESMRTNGYAAVSGGPAPADSLSSLVCLDEQLQGS
YSWDYVLDWEPRFQTMASVFTDIGMLPDRELQVSCEDLTAEACSLVHPPPLITAVAQPGI
RTVVPRRPGRVPSLSRRRSSRKYMYSPLTRNTGLTPSAMTPSFSPSLSSLTVRTPNASPV
VSDLGGGESDLTRGHALQVCWRQKSRLLHTTSLVSNNGTWSKLSTS
NT seq
9861 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaggaggaatgggagccacgctgctcaggacacttgtactctggtcgctttac
gcacattcgctggcgcaggtgttcaacttgacgctgtccgtcaaagagggccttccggcc
ggaaccatcgtgggtgacctgggggcggttctgagcacgccgagcaccgggttcttcatc
tcggagagcagggactcagatgtgttcagagacctggagatagacgcggacacgggcatc
atctccacggcggtggtcctggacagagagagcaggcaccagtatgactttgtggcggcc
acgctcacaggtgagatgatcagagtgaggatagaggtgaaagacgtgaacgaccactcc
cccgtgttcccctcagaggggtttaacctggaaatatcagaagcgagcccccaaggcagc
tgcttcaagctggaaggtgccaaagatgaagatgaggacgagttcggtatccagggatac
cggatcagggagagcgagatggatgacctgttccacctggactaccatcgcagtggatct
gagaagcacctgagcctggatctcctcctcatgagcagattagacagagaagcgcaggac
ttctactctctcaccgtcgaggccttcgacggtggcgtcccacccaggacgggcaccctt
cagctcaacatccgcgtcctggacgagaacgacaacccccccgtgttcaaccagaccgaa
tatcacgcctcggtgcctgaggatgctccgctcatgtctcccgtgtgtcaggtgcacgcc
actgaccttgacctgggcgacaacggcaggatcacctacgagatcaacaggcggcagagc
gaccccaacgaggttttctccatcaacagaaccagcggcgtggtctacctcaacaagccg
cttgactatgaggctcaggttttccacgagctgatcgtcagcgccacagataacggcgcc
cagcccgagtacagcagcgccttcgtcggggtcaaggtgctcaacatcaacgaccacagc
ccctccatcagcgtcctgttcctcagcgagactggagaggccacggtgtccgaggcagcg
gggatcggggatttcgtagcccggatttctgtgtcggatccggattttcaggaggagatg
gtcaccgtcacgctggaggggggtgacgggaagttcactctaaagcagacggatgatttc
ctgtacgctctgtgcgtcagcgcggatctggaccgggaggaaaaggatctgtacgagctg
aaggtgcgagcgtctgatctggggagccctcccctgagcagcgaggtggtcttcctcctg
agggtgaccgacaccaacgactgccgccccgtttttgaaaaggacgcgtacgcggtcagc
gttcccgaggacgcccctcaaggcagctccctcatccgcgtgcagacccgcgatgcggac
gagggcgccaacgcagccgtcaggtactccatcctcagggccaaccaggacggcctggtc
agcatcgagccggagtcgggcctgatcaccacggccgctcctctggacagggaggcgctc
gagcagctttggttcctggtggtggcggctgatggcggagaaccatctctgtcgtccacg
gcgacggtcacggtgctggtgttggacgtgaacgacaacgagccggtgttccaacagcag
ctgtacaacgcgaccgtcccggagcacagcggcgtcggcagctgctttctacaggttgtg
gccacagatgcggacagtcgtgagttcggcacgctgctctactctctgtctgatggcttt
gacggtcaggaacgacaccccctcttccacgtccagccccagaccggagagctgtgcgtc
tctcaggacatcgatcgagacttgggacagacggtccacgacatcctgatccgagctgaa
gatcccgggggtctgagtgctcaaacctacgtgcacgtggaggtggaggacctgaacgac
cacgctccggtgttcaacccggatgaatacaccgtgagcatcagcagccacgctcagccc
ggcgcagagctcctcaacgtcatcgccactgaccgcgactccggcaggttcggtcaggtc
acctatgacatcatccccggagacgggtccggcttgtttgacgtggacccacagacagga
acgctcacccttacctcccctctgggggacctgggagcagccagagtgaagctcttggtg
acggcgcaggacggcgagggcgtgacgtcggccaggcccgctgaggtcaccgtcaatgtt
ctacacagcgcccaggccccagccgtgttccagaggtcacggtacaccttcacggtgccc
gaggacgcaccgccggggacgtccgtggggacggtggaggccatgaccccagcagacttt
tctgcatcagtttcgtaccggatctcatctggagaccccaagggatttttctccatccat
cccaagtccggcctcataagcagcatcaaacctttggaccacgagctgcagccaaacgtc
ctgctggttctccagtcctacaccgacacttctccggtttacagcaccacccaggtcaac
atcgctatcacggacataaacgataacgctcctgttttcctccggaccagggacgccatc
tcggtgtcacagaacaccctcccggggacggtcctgttcatcgctcacgcacatgacgat
gacagcggcgccaacgggagagtgcgataccacctgaggaacaacagatatggcatgttt
ggtatcgaccgcgacctcggagccgttactttaaaccagagcttactggtgagtagtcag
cagagctacaacctggaaattgtggctgaagatggtggagaaccagcgcagagctcctgg
cttagcctcaccgtcagcgtggaccgctctgctgccgaagactctctggcatttgagacc
ttagtgtaccaggtggagatcggcgagggctacaggaaagactccagggtcatccaggtg
agggcgcactggagccggagatcccatctgtccacctcgggcctcacctactccttggag
acggaagctggctctcctcctgctccgtttcggattcacccaaagtccggctggttgtat
ctcagccacaacctggactatgagacagagacgacgttccgctgccgcgtgttggccagg
gcctcgccagcgaatgccacggccacagctgagctcacggtgttggtgctggacgtcaac
gacaatgcgcccgtgttcagcagcgaggtttatcacttcaccgtgtcagaggcgccgtcg
cctcaaggcctggtgggaaccgtcagcgcggtggataaagattccggcataaacgcccag
ctgtcttacatcctgctctcagatgggaagttcttccgcatcaatgctaaaacaggtgag
atcatcaactgggtggcgctggaccgagagcatcacagccagcacactctgaaggtgatg
gtcacggaccagggccacgctcgcctcaacgccaccgccaccgttcacatcctggtcacc
gacaccaacgacaacccgccgcagttcacacacctgcccgccagcaaggaggtcaacgtc
cagatatgggcggaagtgccagcgggatcgttggtgacaaacatgttcgccaaagactta
gatgcaggagaaaatggaaccgtcgccctcagcctggtcccagaagaagcgggaccgtca
cactttgtgatcgacggagaaaccggtgacatcagcacaacggaacatttcagtcagaac
tccaggtccttctacaccctgagaatctgcgcccgagacggtggagctccgcctctggag
gacatcgcagtggtccacgtgcaggttcatggattagaggctccgaatggccgcgccgat
tatccgctcgtgaagcgcttcgtggtgagggaggacgcggagccagccaccgtgatcggc
tctgccggcgttcccaacaaagggagattccactactccatctccgagggagacgggagc
gttcacttcggcatcgacggctcctctggtgacatttacatcagccggccgctggactat
gaggccgccacacagtacttcctcgtggtgcgagctgaagacgcaggactggcgcccgga
gcaaatgtgtccgtgctggtcagcgtgatggtggaagacgtgaacgaccacacgccgtgg
ttccccgataaactggtgcagctcgggctcagcgaggacgccgcagtgggatcgctggtg
tttgctttccaagcgagggacggcgacgggacgcttcccaacagcgccgtccgctacgac
ctgacctatgaccccaaagtcgccgactcgtcatcacacttcccctttgagatcgacccg
ttcactggaagcttgactgtggcaacacctctggaccgggaggccgctcccagtttcgct
tttaccgtgacggccaccgatcaggcgagtaggaaggaggagcgcaagcaggcggcggtg
gcagctcaggtgttcctgctggacgtgaacgacgaccgacccgtcttcagatcggcggtc
tcggttcaggtcatggaggacgcggaggcggggagtctgctgcaccgcttcgtatccaaa
gatggagatgagggtggaaatgggctcgtctcctacaccatcctgaccgggaacacgaaa
ggagtcttcaccctggaggagaagacgggcctcttgtttctgtcagcccctctggactac
gaggcccagcgtctccaccacctcaccatccgggcagcggaccacggtctgccgccgctc
tcgtccacccagacctttacagtggaggtgggggacgtgaatgaccgatcaccggtcttc
agtcagaacatctacaacgccagcgtggccgagaacagagaccccggagaaccggtggtc
agggtctcagccacagatgatgattcagaggagaacgccgtcgtctggtacagcctgctg
ccgggccccggttacgagctcttcagcatcaaccctcacacgggcctcatcactaccgcc
tcgtatctggaccgagagcagcagcctcacttctccctcagagtccaggctcgtgacagc
ggctcgcggcctctgtcggccacggccacggtgctgtgctccgtgctggacgacaacgac
aaccctccgcggttcatgcagtcctccttcagggtcagcctccctgagaacctgcccccc
ggggccatccacacggctcaggcctctgacccagacctcggggaaaatggaaccatacat
tactctatagcaggtgaagacggcgcgggctgcttcgtggtcaacagccgctcaggcgtt
gtcagcaccacaaaggtcctcgatcgtgaggaaaagcagaactacacgctcacaatctgg
gcccgtaactacggccccgcaccgctcagctcgtccacacagctccagctggtgctgctg
gaccagaacgataacgccccgtccttcagcaggaagagttaccaggcctctgtcagcgag
ggcctccctccaggggccgaggtcctccgcctcagtgcttttgaccccgacgaggggccc
aacgggcacgtcacttactccctgacagaggacagcagccacggggccttttcagtggac
tctctgacgggagcgatccggaccaccaggtccctggaccgagagggcagggcccagtac
acgatccgagccgtggccaccgacggctgcnacgcggggcccctccactctgtggcacct
gtgaccatactggtggaagacgtgaatgacaatgtgcccgtctgtgaccagaatcccata
aacgggtgggtctcaatgaggactctaccgaaccagatagtcgccacggtgaccgccgaa
gacggcgaccagggcgagaacggaaccctactgttcgccctgccagacgaggaaaattta
tttgccatcaacagcgagacgggcgagatttcactcaggaggcgggtgagggcaggattc
tccggcaggaagttggaggtcatggtgtcggaccgaggacgacctgttctgacatccgcc
tgcctggttttgatccacctgaaaggagaccaggaaggactgcacttcacaaacaacgtg
tataacgccaccatccaggagaacagtagagctggcacttggataactaaagtcgaggcc
accggacgggcagacagcagacaaagcgtggtgtactccatatttagcggcaatgaacac
agccttttctccatcaaccatcacacgggtgagatccgtgtacagaaagattacgctctg
gactttgagctgagccctcacatccacctggtggtcctggctgagaacgggctgcagacc
acccactgcagggtctccatcagcctgctggacgtgaacgacaacgcgccgcggttcgat
tacagcagctacagaacggccgtctgggaaggacaagcccacaacacctatattatgcag
gtgtttgcgtcagatgcggacggtggaatcaacgggcagatcgagtactctattgtgtcc
ggtgatcctaatcaagcttttattttggactctgttcgggggattctggccaccaacgtc
ttactggaccgtgagatcacgccctcatacaagctggttctgcaggcggcagacaagggg
gagcctcctctcagcagcaccgctaccgtcagggttcaggtggtagacgtcaatgacaac
atccccgccatcccccccatggagcccgtggttatagcagagaaccgaccggcgggtcac
acggtcacccaggtgactgctaacgacgtggatctgagcacgaccatcacctacagcctc
tccgccgaaggcagcacccgttccccattcgccatcgaccagtacaccggggtggttacg
ctgacccaagccctggactacgaggagcaggcggagtacacgctgactgttctggcatct
gactccctccaccagaccagcggagaggtcaaagttcaagtgcttgacgtgaacgacaac
gctccggttttcagcaaggactcctaccaggtggatttgtcggagttggcggccgcagac
acgctagttctgtctgtttccgccacagacagagactctggactcaacggcgagatcacc
tacagactgctgtcgtctccgtcacaaggcttttacatacaggcggacagtgggtctgtt
tttatcaacaagcccataaaagaaatcaccaacggcaacctgatccatctcctggttgag
gctagagacggaggcgatcccgctctttccagtatcacctccatagacgtgcaagttctg
gacaccaatgaccacgtgccgatgttccatcaggaggtctattcactcaccgtccccgag
gacacgccaacagacgccaccttgctcaccttgtctgcggaggaccgggactggagccct
gaaaatacacatctggactatgccattattcagggaaatgaggagcggcggttcagcctg
gaagtcagattagttcaggtagagaatcagtggagaaatgttgggaaacttgttctgtgt
aaccctttagaccgggagaccacagagagctatgtgctaaccgttagcgtggctgatcga
ggtatccccccgctgaacagctctgctgttgttatggtgactgtggcggactgcaatgac
aacgcccccgtgttttccagcacggagtaccacacacaggtgagggagaacagtgctgta
ggtacccacctggtccaggtcactgctcaggatcctgaccttggacccaatggttcgttg
aagtttgacataatttcagggaacggtaaaggccactacaagctcgaccccgattccggc
cttctagtggtcaaccagtccctcgattatgagcaggactccaaatacatcctgaccatc
cgagcctctgatggcggggagttttcggaaaaacgtagagtggcttttacggtggtcttc
atcacagtgttggatgaaaacgacaacagcccacacttcctgttccctgttgttaactgt
tctgtgctggagaacctcccggcattcacccatacctgctctgtgcacgcagtggacaat
gacctcggtccatatggccaggtcacctactcaattttgtcctcttgcttcttggactac
gacagcggcagccctgagaagaaagaagcttttgccattgaccccctaacaggggacatt
cacaccagacagaccttcgattatgaacgggagaatgagtactgtttcgtagtagaggca
caagacaaaggtggtaaatcagccacggtgagagtgcaggtgagcatcaagggcgtggac
gagttcagtcccgtctttacccaaaagcagttccatttccttctgccggaaaattccaag
cgggaagatgttgtcggatttgtgacggcaatggatcatgacagaggagttgatgggatg
gtggaatattcgctcgccagctcatcgccatttttctcagtcaacagaacaactgggagc
attttcgtttcagagccagtgtaccgcagacgaggtagccacggggaggacttggtgaag
ctagtggtgtctgctggtagtcccaaattgtcctccaggaccacaaactgtgtagtcttc
atcaatatctcaagctccgccgaggcccttaccggggcacctcttgacacgcacatgttc
ggcctgagtatttcgctggtcgtgatcctcgttgtcctcctcatttttgtgggcttggtc
ctcagatacaagaccaaagaagtggcgctgaagaaggccgccgccatggcggctaacttg
aactgtggcaccggttcattccatagatccaacagcctaaatcaaagcccgattactctg
caggagataaaacggcccagcattgtggtgcccaagaggcaggtgtcaaacccatacagc
cagtcagactcgagtggccgaggatcagcagaaggtgagatggctgaagaccaggagatc
aggtggattaacgagtacccctgccggaggggggatgaatctgtgcaggggaagccggtc
cctgacatctcacattccgctctacgccaggacgacatctcgtgtcattctgtcagcgtg
gcgccagagcacgtgatgaataagcgtctgtcatcagagatggccagcaccgaaagcctc
taccacttcaaagaagaggggggtggcgagggactgcttcctctacttcctgctattgtc
aggatgaaggatttggaggagagcatgaggacgaatggctatgctgccgtttcagggggg
ccagcccccgcagactccctgtcatcactggtgtgtctggacgagcagcttcagggcagc
tacagttgggactacgttctggactgggaacctcgtttccagacgatggcctccgtcttc
accgatatcggaatgctgcccgacagggagcttcaagtcagctgcgaggacttgacagct
gaagcttgctctctcgtgcaccccccacctttaataacagcggtggctcagcctggcatt
agaactgtcgtgccacgcaggccaggacgcgtgccgagcctgagcaggaggcgctcttcc
cgtaaatacatgtattcccccttgacaaggaatacgggactaaccccttcagcgatgaca
cccagtttttccccatccctgtcttctctcaccgtaagaacccctaatgcctcaccagtt
gtctctgacttgggggggggggaatcagacttgactcggggccacgcactgcaagtctgt
tggaggcagaaatccagacttttacacaccacaagtttggtctcaaacaacgggacctgg
agcaaactttcaacatcgtga
DBGET
integrated database retrieval system
