Takifugu flavidus (sansaifugu): 130527305
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Entry
130527305 CDS
T09160
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130527305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130527305
03009 Ribosome biogenesis [BR:
tfs03009
]
130527305
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130527305
Spliceosome [BR:
tfs03041
]
Complex A
U1 snRNP components
U1 related factors
130527305
Complex B
130527305
Ribosome biogenesis [BR:
tfs03009
]
Eukaryotic type
Pre-60S particles
Helicases
130527305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130527305
NCBI-ProteinID:
XP_056891653
LinkDB
All DBs
Position
6:15324936..15333296
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AA seq
632 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGPPRFGGGGNKSGAPPGKFGNPGERLRKKHWNLSELPKFQKNFY
QEHPDTSRRPPQEIEQYRRSKEVTVKGRDCPKPILKFHEAAFPSYVMEVISKQNWTDPTP
IQSQGWPVALGGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INIGALQLSANHNILQIVDVCSDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDELTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAGDLISVLREANQAINPKLMQMAEDRG
GRGRGGRGGFKDDRRDRYSGGARSGYGGYRDRDNDRGFGGGPKGGFGGIKVQNGVGCGGN
GGNPGGGYGNNSYSSSNGQGHFGASANQVGAFGNQSFQGPPQFGGMQRSAQNGMNHPAFP
FASQPPPPPQQGQQPPTPPPMVPYPMPPPFPQ
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgcctggtttttctgacagagatcggggcagagatagagggtatggaggacctcctcga
tttggaggagggggcaacaagagcggagcccctccaggaaagttcggcaaccctggagag
aggctgcggaagaagcactggaacctgagcgagctccccaagttccagaagaacttctac
caggagcaccccgacaccagccgcaggcccccccaagagatcgaacagtaccggcggagc
aaagaggtgacggtcaaaggccgagactgtcccaagcccatcctgaagttccacgaagct
gcatttccaagctacgtcatggaagttattagcaagcagaactggactgacccaactccc
atccagtctcaggggtggcccgtggctctcggtggcaaagacatggttggcatcgctcaa
acgggctctgggaagacgctggcctacctgctgcccgccatcgtccacattcaacaccag
ccgttcctggagcacggagatggacccatatgtttggtgctggctccaactcgagaactg
gctcagcaggtccagcaagtggctgcggagtatggcagagcttcccgtctcaaaagtacc
tgcatctatgggggggcgcctaaagggcctcagatcagagaccttgaaaggggcgtggag
atctgcatcgctactccagggcgtctcatcgacttcctggaatgtggtaagactaacctg
cggcgttgcacctacctggtcctggacgaggcggaccgcatgctcgacatgggattcgaa
ccccagatacggaagatagtggaccaaatccgcccggaccgtcagactctgatgtggagc
gccacctggcccaaggaagttcgccagctggccgaggatttcctgaaggactacgtccag
atcaacatcggtgctctgcagctcagtgccaaccacaacatcctgcagatcgtggacgtg
tgcagtgacatggagaaggaggacaagttgatccgtttgctggaggaaataatgagtgaa
aaggaaaacaagaccatcattttcgtggagaccaagagacgctgtgacgagctgaccagg
aggatgaggagagacgggtggccagcaatgggaatccatggagacaagagccagcaggaa
cgggactgggtcctgaatgagttccgatacggcaaagctccgatcctcatcgctacagac
gtggcctcgcgtggattagatgtggaggatgtgaaatttgtcatcaattatgactaccct
aactcctccgaggactatatccatcgcattggacgcacagcccgaagtcaaaaaacgggc
accgcttacaccttcttcacccccaataacatgaaacaagccggcgacctgatctctgtg
ctccgggaggccaaccaggccataaaccccaagctgatgcagatggccgaggacagagga
ggtcgtggaaggggggggagaggtggcttcaaggatgatcgccgtgataggtattctggg
ggtgcgaggagcggctatggtggctacagggacagggacaatgataggggatttggtggg
gggccaaaaggtggctttggtggcattaaggtccagaatggtgttggctgtggaggtaat
ggtggtaaccctggtggtggttatgggaacaacagctatagcagcagtaatggacaggga
catttcggagcttcggcgaatcaggtgggtgcctttgggaaccagagcttccagggcccc
ccccagtttgggggcatgcagaggtccgcccaaaatgggatgaatcatccagcgttccca
ttcgcctctcagccgccgccgccgccacagcagggccagcagccaccaacccctcccccg
atggtcccctatcccatgccaccaccctttccacagtag
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