Takifugu flavidus (sansaifugu): 130527414
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Entry
130527414 CDS
T09160
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130527414 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130527414 (patl1)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130527414 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
130527414 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Death_3
Motif
Other DBs
NCBI-GeneID:
130527414
NCBI-ProteinID:
XP_056891880
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All DBs
Position
6:complement(8663400..8696539)
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AA seq
835 aa
AA seq
DB search
MFRFQFIDEDCTLEEEEDGPVEDEDEIDQYNDDTFGAGAIDDDWQEEHKRLTELDEKDGL
SLGGAGIRAESELGNVENSSNLPSSAKRHPLPSSLPLPNFSTICLDSPPLDVEARGGDSQ
LADSLARIIQETDPAIAGVGAAERPFLSPRSSVSSLTGAILQGPGQPKVMVQTCSNEHST
QVHYHHNPQHSQSPRSHNTGLSSLSQPSSRLGFYPQEHVMHRGSGHMSQVNSHSIWENSM
AFCPASITVGLGSCVEDSSPLSGFKETGLPKRLLQAGNDGQDLSERVPPPRSSSPVIGSP
PVRVVPIGTPPKQPVSHTINHQIQHPLAVHVRAPGQHRFPPPYTERLSPNTLLNIANSPL
CRGPFPPRVGPVLSQIQRAQILNPQGLGVSSVVARFPCTGPAPPLLPGGGFRQFFGGSVP
SGQRMASLPPRGLTSHGAAIRHNTTHLHPQHHRMLTQRMQNQAGNHSRTGGDRRSRDPYS
NLMTQKEKEWVTKVQMMQLQSTDPYLDDYYYQNYYEKMEKRQERQTDSSKKEHTTKLITP
QIAKVEHSYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTARSDDEEKREKQVWNKRRQILY
TVEKIYSLLLEVQDFEKHFVQTSEEDREALLEQHKANTSQLCNSLLEKEWENRVSDEQCL
MIMSVRKGKRLISRLLPFLPSQQAGAVIMAIARNLPVLAKKDKQDQVLCSLVEPVAAVIP
SLSSSALIGLLQELQSSDGQLESILHNKFGVTLLYLILSEGERMQTLDPNCQLMEDNRWT
ELVFSVSRELLSIPSSSLSSPLFIPPNLQSLLSRYVDQQSLEYLHDKLQITPFSR
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagttcattgatgaagactgtactttggaggaggaggaggatggacca
gtagaggatgaagatgaaattgatcagtacaatgatgacacctttggagctggggctatt
gatgatgactggcaggaggaacacaagcgtctcactgagcttgatgagaaggatggattg
agtttgggaggagcagggataagagccgagtctgaattagggaatgttgagaactcctca
aatcttccttcctctgccaaacgacatcctcttccttcatcacttccattaccaaatttc
tccaccatttgccttgactcgccgccgctagatgtagaggctcgaggaggggattcacaa
ttggctgattcccttgcaagaatcattcaggagactgacccagccattgctggtgttggg
gcagcagaaaggcctttcctatcgcccagatcctcagtctccagcctgactggggcaatc
ctgcaaggtccagggcaacccaaagtcatggttcagacttgctctaatgaacattctact
caagtgcattatcaccataacccccagcactcgcagtctccaaggtcacacaatacaggc
ctttcatctctctcacaaccctcgtccagacttggcttctacccgcaggagcatgtgatg
cacagagggagtggtcatatgagccaggtgaattctcacagtatctgggagaacagcatg
gctttttgtcctgcgagcatcactgttgggttgggttcatgcgtggaggatagttctccc
ctgtcgggtttcaaggaaacaggacttcctaaacgacttcttcaggctggtaatgatggt
caggatttatcagagagagtcccacctccacgctcttcctctccagtgattgggtcccct
ccagtgagggtcgtacctattgggaccccaccaaaacagccagtgagccataccataaat
catcagatccaacatccattggcagttcacgttagagccccgggccagcacagattccca
cctccttacactgagcgtctgtcaccaaacaccctcctcaacatagctaattccccactg
tgtcgtggtcctttccctcccagagttggtccagtgctgtcccagattcaacgagcccag
attcttaaccctcagggacttggggtctcatcagtggtggctcgttttccctgcactgga
ccagccccccctttattaccaggtggtggtttcaggcagttttttggtggctctgtgcca
tctggccagcgcatggcatcactgcccccccgtggcctcacaagccatggagcagcgatt
agacacaatactactcatcttcatccacaacaccatcgaatgctcacccagcgcatgcag
aaccaggctgggaatcatagcaggactggaggggaccgcagaagtagagatccctacagt
aacttgatgactcaaaaagaaaaggagtgggtgaccaaagtccaaatgatgcagctgcag
agcacagatccttatctggatgactactattatcagaactactatgaaaaaatggaaaaa
cgtcaggaaagacaaacggacagcagcaagaaggagcataccaccaagctaataacaccc
caaattgccaaggttgaacattcctatagacctgttcagtttgcaggttctcttggtaag
ctgacagtctccagcgtcaacaacccccgtaagatgattgatgccgtagtgacagctcgc
tcagatgatgaggagaaacgagagaagcaagtgtggaataagagaagacaaatcctttac
acagttgaaaagatctacagcttgttgctggaggtacaagacttcgagaagcattttgta
caaacttcagaggaggaccgggaggctttgcttgaacagcataaagcaaacacttcgcag
ctgtgcaactcactgttggaaaaagagtgggaaaacagagttagtgatgagcagtgtttg
atgattatgtcggtgagaaagggcaagcgacttatctccaggctcctcccctttttgcca
tcacaacaagctggtgcagttatcatggcaattgcccgcaaccttcctgtcctggccaag
aaggacaaacaggaccaggtgctttgttccttggtggagccagtcgctgcagtgatccca
tcactctcaagctctgccctcataggcctcctccaggagctccagagcagtgatggacag
ttggaatctatactgcacaacaagtttggtgtgactctgttgtacctgatcctgagtgaa
ggagagaggatgcaaaccttggacccaaactgtcagcttatggaggacaacagatggact
gaattggtgttctctgtgtcaagggagctgctgagcattccatcctcctctctttcctct
cctctcttcatccctcccaacctgcagtctctcctctctcgctatgttgatcagcaaagc
ctggagtatttgcatgacaagttacagatcactcctttctccaggtag
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