Takifugu flavidus (sansaifugu): 130527438
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Entry
130527438 CDS
T09160
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130527438 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfs03021
]
130527438 (taf5l)
03036 Chromosome and associated proteins [BR:
tfs03036
]
130527438 (taf5l)
Transcription machinery [BR:
tfs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130527438 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
130527438 (taf5l)
Chromosome and associated proteins [BR:
tfs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130527438 (taf5l)
STAGA complex
130527438 (taf5l)
TFTC complex
130527438 (taf5l)
SAGA complex
130527438 (taf5l)
SLIK complex
130527438 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
TFIID_NTD2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
PEP5_VPS11_N
WD40_like
Nbas_N
WD_LRWD1
PROPPIN
Motif
Other DBs
NCBI-GeneID:
130527438
NCBI-ProteinID:
XP_056891947
LinkDB
All DBs
Position
6:complement(7394298..7398546)
Genome browser
AA seq
619 aa
AA seq
DB search
MRVVLKTLQVSDSSLGCSQVMKRVRTEQIQFAVTQFLKRRQYVDTESSLKGGKLFQSAEE
MAASLTVQTESGCANIVTAAPCQSDPQQYEAQYSRLCSFLSETEISWAKEVSSILYPLFV
YLHLDMVLCGLKGAVDGFYSRFHGVFVQDSEQRATIEQLRHVLTAQDIAANPKLSAFLEH
KYVVHMTEPAYSYLLRYLQSEDNSTVCRALSTHLHVEVTASRRTDYQLYGSTYGVTPAGN
STSSWVGVDGAEGGEGVEVPAGIPQSEAALDALQDCIKKVREGPPTLTTVCFYAFHHTEQ
MLNTAEVSADSRLLAAGFDSSTVKLWSLRARKLKAKPHQSDVSHIHLACDVLEEGDEEDD
YGSEIKTMRGHSGPVFRTAFLTDSSGLLSCSEDTTIRYWDLGSFTNTVLYQGHTYPVWDV
DVSPCSLYFASASHDRTARLWTFSRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV
RLWSTQQGASVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRVKLWDLATGTLFKDLRGHT
DSVTSLSFSPDSSLVASSSMDNSVRVWDIWNSHGGTSADGSSSELVGLYTGNTSNVLNVQ
FMACNLLLVTGTAQEKVEQ
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgtcctgaaaacgttgcaggtgagtgattcgagtcttgggtgttcacaggtc
atgaagcgggttcgcactgagcagatccagtttgctgtgactcagttcctgaagcggagg
cagtatgtggacactgagagttccttgaagggaggcaagctgtttcagtctgctgaagag
atggctgccagcctcacagttcagacggagtctggttgtgccaacatcgtcactgcggcg
ccctgtcagtctgaccctcagcagtatgaggctcagtactcacgactttgctcctttctc
tcagaaactgaaatctcatgggcgaaagaggtgagcagcattctctacccactgtttgtc
tacctccacctggacatggtgctgtgtggccttaagggagcagtagatggattttacagt
cgtttccacggagtttttgttcaggacagcgaacagcgtgcgactatagaacagcttcgc
catgttctcaccgcccaggacattgcagccaaccccaagctgagtgctttcctggagcac
aagtatgtggttcatatgactgagccagcctacagctacctgctgcgttatctacagagt
gaagacaacagcactgtctgcagggctctcagcacacacttacatgtggaggtcactgcc
tccagacgaacagactaccagctgtatggaagtacttacggagtaactcctgcaggaaac
tccacctcctcttgggtaggagtagatggagcagagggtggggagggggtagaggtccca
gcagggattccgcaaagtgaagcagcacttgatgctctgcaggactgcatcaagaaggtc
cgtgaaggcccaccgaccctcacaaccgtgtgtttttatgctttccaccacacggagcaa
atgctaaacactgctgaggtttcagctgacagccggctgttggccgccggctttgatagc
tctacagtgaagctgtggagtctgagagccaggaaactcaaagccaaacctcatcagtct
gacgtatcgcacatccacctggcctgcgacgtcctggaggagggggatgaagaggacgat
tatggcagtgagataaagacgatgcgaggtcacagtggcccagtgtttcgcactgccttc
ctgacggacagctctggcctactgtcttgctctgaggacacgaccatccgttactgggac
ctgggcagcttcaccaacactgtgctctaccaaggccacacctacccggtatgggatgtg
gatgtcagcccttgcagcctttactttgccagcgcctcccatgaccgtactgcccgcctc
tggacattctcccgcacttacccacttcgcatttatgctgggcatcttgcagatgttgac
tgtgtcaaattccaccctaattccaattatctggctaccggctctaccgataagactgtt
cgactgtggagcacccagcagggggcctctgttcggctgtttactggacaccgtggcccg
gtgctgtcgcttgctttctcacccaatgggaaatatctggcttcagctggtgaggaccag
agggtaaagctctgggatttggccacaggaacattgttcaaagacttgcggggtcacacc
gacagtgtcaccagcttgtctttcagccctgacagcagcctagtggcatcttcctctatg
gacaactcagtcagggtgtgggacatctggaactcccatggtgggacgtcagctgacggg
tcatccagtgagctggtgggactgtacactgggaacaccagtaatgtgctgaatgtccag
ttcatggcctgcaacctgttgctggtgacgggaacagcacaagaaaaggtggagcagtaa
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