Takifugu flavidus (sansaifugu): 130527580
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Entry
130527580 CDS
T09160
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
130527580 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfs04121
]
130527580 (slx4)
03400 DNA repair and recombination proteins [BR:
tfs03400
]
130527580 (slx4)
Ubiquitin system [BR:
tfs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
130527580 (slx4)
DNA repair and recombination proteins [BR:
tfs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130527580 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
Slx4
zf-met
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
130527580
NCBI-ProteinID:
XP_056892187
LinkDB
All DBs
Position
6:complement(12081585..12089467)
Genome browser
AA seq
1581 aa
AA seq
DB search
MSTIMDDSCQDFVEVCSKLLKPARKKQGEPRPQRKAEKQPPRLSGDAKGKRKHNKDGNSG
PRGAGAQPVGAPAEAIPGVVSGLKSEEASRVEGGWTAKDKVLQRMQEFKRTSPQKMVHTN
NNPTLDVPPPTLMKHKGSPEPFSSNGPLEPEDSDEALALQLQEELDREAVRAQAGDLMDG
GLFFCHICNKELTHMTPAGRTQHVNRCLDESEGSASVPPLPSSSAVPNCPICGKRFKSPK
SHSAHLKRCSSDMGVSPAELLQALHRQAEERQNAHALAETVPTKRKGSSRTGVRAKKPRK
KAEVLDEKTMVALALSSSLYEQEREAERALQPEPAASRTSIPALTWMSDTGKGKKKKRAL
PRPPPLLLVQDVEAALTRLQERASALLLCNRPPSPPTPPRCPSSLPGWSGAAPLWQRSSL
LEDPAHQSDLYTHDLRGFFTISDAATVRSVQNSFQISPVPSSSITSASSDCPAQERVPAV
TTEESILPPSPTAAASMATEELPVSTQVFRDLMELAEDCIVLSQSSHSASCSDRDVQNTS
LVPSGFVQEEPEDQADLCTSDFPHTNSAANQTRRQTGQLRGQDHSGSLRSVAFSCLSSDL
GSMVNNPQLSDVQLQVDSGDVYFAHSFMLYARCPLLVEMVHENGFGVQEEGMPAAQRILI
SDIPGQAVFALLQYLYTAHFSIPPSLRLHVLELASRFDLKQLAQLCELTQEEAASQGHDE
DTANRENADSQKDEAFSDLLRSMWNEEDEDIEAAAGDKGHDREKSAEEDKDFTAGDGEIC
EERVNEKELEEIYEFAATQRKKDEESDNEPEQEQSGEESTNLSIAKESTCHDVTNANRVL
GLDPDLDRSYSSLFSDSLGNCQEGDLPSSSCSVQIPQTPNAKVFPKLSPDPPGRNLLQSS
ASVADDLSLSAPPATSTLPVPGESPGQQRDCEPEGFLPKHKSQSRCGLSIDLSPDQQQKK
KEPELIVLSDSSSPSPDSPLPHYTQIRPYPSKSNMGFKKLAGAECSPDCPTADQSPLDCS
PELSWLIPSTPVQHSKSTSSSSTQTRSSIFRMQLFPKSDTSAPFFSSPDSAGAFTRICSV
EGDVLEVNPERSAPHSSTPLHPEIQKHPAPPGSSMRRCSFDTQRRTEEEPADRTEQASFH
LSQGQLAEVGAPESPKSDVTGSGTIEKGEREEAAPSCFLIDMDEPPMAFNDSWGLNDANP
GCFSLRLEDSRDSSRQEPPREPQDAGSGSGRRLPPPSPDAGSSPSEAHCSQPAPDIQAQT
VSSPQASSRSPPQLSTSLLDPNTWDRWEEEEEEEEEEEEVLPLSQRINPSARLQTPVSRQ
KRRRALVPITPMPHYSDMDTPELKNKLNRFGVRPLPKRQMILKLKEIHQYTHQLVGSDSE
DEAPPGSCATGMRPSSVATGNRQHSCSQPVKFKEPTIPPSTSPLEPSCEDQVELLSASQG
SNTSSTAASDESERSNPELVPSSDGDSDSDCGISASQATSRLQDRLQAVRSLILSDPDLY
AQILEYRPLVLSQFQGRLKAAGIRLGISKLADYLDSQCITFTTAKPGQPAARRRRAKRTG
KRPAPAGENGPRRKKGVPATG
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccataatggatgattcgtgccaggattttgtggaagtctgctctaagctgctg
aaaccagcccgaaagaaacagggtgagcctcgaccgcaaaggaaagcagagaagcagcca
cctcgtctgtctggtgatgccaagggaaagaggaaacacaataaagatggcaactctggc
cccagaggtgctggtgcccagccagttggtgcacccgcagaggcaatcccgggggtcgtt
agtggattaaaatccgaagaggccagcagagtggagggaggatggaccgcaaaggacaaa
gtgttgcaaagaatgcaggagttcaagaggaccagtccacagaaaatggttcacacgaac
aacaatcccacccttgatgtgccccctccaacactgatgaagcataaaggtagccccgag
cccttcagctccaacggtcccctggagccggaggacagcgatgaggcactggccctgcag
ttgcaagaggagctggacagagaagcagtgcgagcccaggcgggtgatttgatggatgga
ggtctcttcttctgtcatatctgcaacaaagagctgacgcacatgactcctgcggggagg
acacagcacgtgaacaggtgtttggatgaaagcgaaggaagtgcttcagtgcctcctctg
ccttcgtcttctgctgtccccaattgtcccatctgtgggaagaggtttaagtcccccaag
agtcattcggcccacctgaagcgctgctcctcggacatgggcgtctccccagctgagctg
cttcaggctctgcacagacaagctgaggagagacagaatgcacacgcgctcgcagagact
gtacccacaaagagaaaaggttcgtccaggacgggtgtccgagcaaagaagcccagaaaa
aaggctgaagttttggatgagaaaaccatggtggccttggccctgtcctcctccctgtat
gaacaggagagggaggcagagagagcgttgcagccagagcccgcggcctctcgcacctcc
atcccagcgctaacgtggatgtcggacacaggtaagggaaagaagaaaaagcgggcgcta
cctcgaccacctccgctgcttctagttcaggatgtggaggcggctctgaccagactacag
gagcgggcgtctgccctgctcctctgcaatcggccgccctcgcccccgaccccaccacgc
tgccccagcagccttcctgggtggagcggtgcagcccccctctggcagaggagctcgctg
ctggaagaccccgcccaccagtcggacctctacacccacgatctcaggggattcttcacg
atctcggacgctgcaacagtgagaagcgttcagaattcctttcaaatcagcccagtccct
tccagcagtatcacatctgcatcttctgactgtcccgctcaagaacgagtccctgccgtc
acaaccgaggaatccatccttccaccgtcgccgacggctgctgcctccatggcaacggag
gagctgccagtcagcactcaagtgtttcgagacttgatggagctggctgaagactgcata
gtcctcagccagtcgagtcactcagcttcatgctctgatagagatgttcagaacacaagc
cttgttccaagtgggtttgttcaggaagagccagaggaccaggctgacctctgcaccagt
gacttcccacacacaaattcagcagcgaaccaaaccaggagacaaaccggccagctcaga
ggacaggaccattcaggaagcctcagatcagtggctttctcatgcctaagttcagacctg
ggcagcatggttaacaatcctcagctcagtgatgtgcagctccaggtggactctggtgac
gtctactttgcgcattcctttatgttgtacgcacgctgccccctgctggtagagatggtt
catgaaaatggctttggtgtgcaggaggaaggaatgcctgcagcccagaggattttaatt
agtgacatcccgggacaggcagtgtttgctttgttgcaatacctttacacagctcacttc
tccatccctccatcattgcgcctccatgtgctggagcttgcatccagatttgacttaaag
cagctggcgcagctttgtgagcttacccaagaggaagcagcgagtcagggacatgatgaa
gacaccgcgaacagggaaaatgctgacagccagaaagacgaggccttctcggacctgctc
cgctccatgtggaacgaggaggatgaggacattgaggctgctgctggagataaaggacac
gatagagagaaatcagcagaggaagataaggattttacagcgggtgacggggagatttgt
gaggagagagtgaacgagaaagagctggaggaaatctatgagtttgctgccacgcagaga
aaaaaagacgaggagagtgacaacgagcctgagcaggagcagagtggagaggagtctaca
aacctgtccatagctaaagaatcaacatgccatgacgtcacaaatgcaaatcgagtcctg
gggttggaccccgatctagaccgcagctacagcagcctcttttcagactctttggggaac
tgtcaggaaggagacctcccgtcctcatcctgctctgttcagatccctcaaactccaaat
gctaaagtgtttcctaaattatcacctgatccgccgggcagaaacttacttcagtcgtca
gcgagcgttgctgacgacctgtccctcagcgccccccctgctacgtcgaccctccccgtc
ccaggcgaatcccctggtcaacagcgtgactgtgagcctgaaggtttccttccaaagcac
aaaagtcagagtcgctgtggtttgagcattgatctttctcctgatcaacagcagaaaaag
aaggaacccgagctcattgttctgtctgactccagcagtccttccccagattctcctctt
cctcactacacccagatcagaccgtatcctagcaaatccaatatgggtttcaaaaaactc
gccggcgccgagtgtagtcccgattgtccgactgcagaccagagtccgctggactgctct
cctgagctgtcctggctaatcccatccaccccagtccaacacagtaaaagcacctctagc
agctccactcagaccaggagcagcattttcaggatgcagctgttcccaaaaagcgacact
tcggctccgtttttctcttctcccgattcggcgggagcgtttactcgcatttgttcagta
gagggcgatgttctcgaggtaaatccggagagatcggccccccacagcagcaccccactg
caccccgagatccagaagcatccagctcctcctggcagctccatgcggcgctgcagcttt
gatacgcagaggaggacggaggaggagccggcagacaggacagagcaggccagttttcat
ctttcacagggacagctagcagaggtcggcgcaccagaaagcccaaaaagtgatgtaaca
ggaagtggaacaatagagaagggagaaagagaagaagctgccccctcatgctttctcatt
gatatggacgagcccccgatggcgtttaatgactcctggggtctcaacgatgctaaccca
ggctgcttcagtctgcggctggaagacagtagagacagcagtcggcaggagcctcctcgg
gaaccgcaggatgcaggttcaggctccggccgtcggctcccgccacccagtcctgatgcg
ggttcatccccctccgaggcccactgctcccaaccagcccccgacatacaggctcagacg
gtctcttcaccacaagcatcctccaggtctccaccccagctcagcaccagtctcctggac
ccaaacacatgggacagatgggaggaggaggaggaggaggaggaggaggaggaggaggtt
cttcctctctctcaaagaatcaacccttctgcgcgactccaaacgcccgtttctcgccag
aagaggcggcgcgccttggtgcccatcacacccatgccccactactctgacatggacacg
ccagagctcaagaacaagctcaacaggttcggcgtccggcctttaccgaagcgccagatg
atcctcaaactgaaggagatccaccagtacacccaccagctggtcggctctgactctgag
gacgaggccccacctgggagctgcgcaacggggatgaggccctcttcggttgccactggc
aacaggcagcattcctgctcacagcctgtaaagtttaaggaacccactattcctccatcc
acctcccctctggaacccagctgtgaggatcaggtagagcttctttctgcctcacaggga
tccaacacctcctcaactgctgccagtgacgagtctgaacggtccaacccggagctggtc
ccctcctccgatggggactcggactccgactgcgggatctctgcctcccaggctacgtcg
cgcctgcaggatcgcctccaggcggtgcgctccttgatcctgtccgaccccgacctctac
gctcagatcctggagtaccggcctctcgttctgtcccagttccagggacgactaaaagca
gccgggatccgtctgggtatctccaagctggcagattacctggactcccagtgcatcacg
ttcaccacggccaaaccaggtcagcctgcggcccggcgccggcgggccaagaggacgggt
aagaggccggcgccagcgggggaaaacgggccgaggaggaaaaaaggagttccagccaca
ggttaa
DBGET
integrated database retrieval system
