Takifugu flavidus (sansaifugu): 130527714
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Entry
130527714 CDS
T09160
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tfs04515
]
130527714 (pcdh18a)
Cell adhesion molecules [BR:
tfs04515
]
Cadherins
Protocadherins
130527714 (pcdh18a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
TMEM154
PepSY
MPS-4
G1_gp67_N
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
130527714
NCBI-ProteinID:
XP_056892402
LinkDB
All DBs
Position
6:14094711..14102499
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AA seq
1184 aa
AA seq
DB search
MKSLFLSRMWKVVAVLAAAVAVAPHVRGKTLKYQTFEEQKVGTVIARLRDDVADVLAKLP
STVSLRFRAVQRGSSSFLSVRDQDGEISVRTKIDREKLCEKNLNCSIQFDVLTLPTEYLQ
LFHVDVEVLDINDNAPQFARSVIPIEISESAAVGARIPLDSATDPDVGENSLYTYALEPN
NFFKIDIQARTDGAKYAELVVIRELDREVRATYELQYTASDRGVPPRTGSTLLKINIADS
NDNSPVFEKSSYVINLPENSPVGNLLINLNATDADEGTNAKIVYSFSSHVSPKIMETFKI
NADTGHLTLIRRVDYETINSYDIDVQAQDMGPNSMPAHCKILVTVVDVNDNKPDISINPM
SSQGNGDAAYISEASPLDNFVALVRVEDLDSGVNGEVDCKLHSQGYFKLHKSNENNYMIL
TNMSLDREKRSEFSLTVVAEDRGTPSLSTVKHFTVHITDENDNPPRFEKGRYEVFKSENN
APGAYLTSVLATDPDLDTNGQVSYSILENSVHGNSISTYVTIDPSNGAIYALRTFDREDV
SRITFVVQAKDAGKPPMSSNATVILNILDENDNPPVIVVPQLWNFTADVPASKFTEAGQL
VTMVRATDRDTGVNAELICSIVSGNEESFFLIDPRTCEIHANTSLENYPHEHAELTVMVR
DQGRESLSAKAVLKITLYENMENHVQVMDQGESTVDAPLIIIISLVAICAVLLVIMVVFA
AHSSREKKDTRNSYNCRVAESTHQHHPKKPSRQIHKGDITLVPTVNGTLPIRAHHHSPSA
TPPMDRAQMGSRQNHNSRQSLNSLVTISSNHIPESFALELAHATPPVEQVSQLLSMLHQG
QYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDCDMGRESPVDRLLLGEG
FSDLIHLEMHHRLHPAMRLCTDECRILGHSDQCWMPPLSSPASSADYRNNMYIPGEESSQ
QPPTDDDQSSVDSERRKSFSTFGKECGSEEAGGVMGGGGSDPCVPGGGAGSLLTEMNSVF
QRLLPPNMDSYAECTETSSPSSTAERTNGRGGNVVSNHSNSAVPQDNRRVLLPGGKGPAY
PPGVAAWAASTHYLNPASGSVGTNHVSTSTAPTASAPANGQSSHLKWLPAMEEIPENYEE
DDFDGVFHQGHPGGKRTEVGHEAAMESSELVHEINKLLQDVRQN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtctatttctgtcaagaatgtggaaagttgtggctgttttggccgcggcggtg
gcggtggcgccgcacgtccgaggcaagacgctgaaatatcagacttttgaggagcagaag
gtcggcacggtcatcgctcggctgagggacgatgtcgccgatgttctggcgaaacttccc
agcacggtgtcgctccgcttcagagccgtgcagcgagggagctcgtccttcctctccgtg
cgcgaccaggacggagaaatcagcgtcaggaccaaaatcgaccgcgaaaaactctgcgaa
aagaatctcaactgctccatccagttcgacgtgctcacgctgccaaccgagtacctgcag
ctcttccacgtcgacgtggaagtgctggacatcaacgataacgctccgcagttcgcccgc
tccgtcatccccattgagatctccgagagcgcggccgtgggggcgcgcattcccttggac
agcgccacagaccccgacgtcggtgagaactctctgtacacgtatgcattagagcccaac
aactttttcaagattgacatccaggccaggacggatggggctaaatatgcggagctggtg
gtgatcagggagttggaccgggaggtgcgcgccacttacgaacttcaatataccgcttct
gacaggggcgttccccccagaacgggttcgacccttctaaaaatcaacattgctgactcc
aacgacaacagcccggtttttgagaagtcttcatatgtgattaacctcccagaaaattca
cctgttggcaatttgctcattaacctgaacgccactgacgcagatgaaggcacgaacgcc
aagatcgtttactccttcagtagtcacgtgtcgcctaaaatcatggagaccttcaaaatc
aatgccgacaccggtcacctgaccctcatcaggcgcgtggactacgagaccatcaactct
tatgacattgatgtccaagcgcaggatatgggcccaaactcaatgcctgcgcactgcaag
atcctggtgacggtggtggatgtgaatgacaacaaaccggacatcagcatcaaccccatg
tcctcccagggcaacggggatgcagcttacatttcagaggcctctcctttggacaatttt
gtggctttggtgagggtggaggacttggactcgggggtaaacggtgaagtcgactgcaag
cttcacagccagggctatttcaaactgcataagagcaacgagaacaactacatgatcctc
actaatatgtccttagatcgagagaagaggtcagagttcagcctgacggtggtggcagaa
gaccgcggtactcccagtctttccacggtcaaacatttcaccgtgcacatcactgacgaa
aacgacaatccgcctcgttttgagaagggtcgttatgaggtcttcaaatcagagaacaat
gcccccggagcctacttgacctctgtcctggccactgaccccgatctggacacgaatgga
caggtgagctattctatccttgagaactcagttcacggcaactccatctccacctatgtc
accattgacccatctaacggcgccatctatgcactgcgtacctttgaccgcgaggacgtc
agtcgtatcacctttgttgtgcaagccaaagacgcgggcaaaccaccaatgagcagcaac
gccaccgtcatcctcaacatcctcgatgagaacgataaccctccggtcatcgtcgtcccc
cagctgtggaactttacagctgatgtgcctgcgtccaagtttacagaggcggggcaatta
gtgaccatggtgagggcaaccgatcgggacacaggggtcaatgccgaactcatctgctca
atagtcagcggcaacgaggagagttttttcctaattgatccgagaacctgtgagatccac
gccaacaccagcctggagaactaccctcatgagcatgcagagctgaccgtcatggtccgc
gatcaagggagagagagcctcagtgccaaagcggtgctgaaaatcaccctctatgagaac
atggagaaccacgtccaggtgatggaccaaggggaatcgacggtcgatgcgccattgatc
ataatcatctccctggtggctatctgcgccgtcctcctggtcatcatggtggtcttcgct
gctcactctagccgagagaaaaaggacacaaggaactcctacaactgccgggtcgccgag
tcaacccatcagcaccatcccaagaagccctcccggcagatccacaagggggacatcacc
ctggtccccacagtcaacggtacgctgccaatccgggcgcaccaccactcgccctcagcc
acgccacccatggaccgagcccagatggggagcaggcagaatcacaacagccgccagtca
ttgaacagcctagtaaccatctcatccaatcacatcccagagagctttgccctggaactg
gcacatgcgaccccaccagttgagcaagtctcacagcttctgtccatgctccatcagggc
cagtaccagcccagacccagtttccgtggcaacaaatactcccgcagctacaggtatgca
ttacaagacatggacaaattcagcctaaaggacagtggccgtggggacagcgaggcgggg
gacagtgattgcgacatggggcgggaatctccggtggacaggctgctgctgggggaggga
ttttctgacctgatccacctagaaatgcaccacaggctccacccagccatgaggctgtgc
acagatgaatgtcgaatcctgggacactctgaccagtgctggatgccccccctctcctcg
cctgcctcctcagctgactatcgcaacaacatgtacatcccgggggaagagtcctcccag
cagcccccgacggacgatgatcagtcctccgttgactcggaacgccgcaagagcttctct
acttttgggaaggagtgtgggagcgaagaggccgggggagtcatgggtgggggaggaagt
gacccctgtgttcctggaggaggggctggctccctcctcaccgagatgaactcagtgttc
cagcggctgctcccccctaacatggactcttacgcggagtgcaccgaaacaagctcgccc
tcttcaaccgctgagagaacaaacgggcgcggtggcaacgtggtcagtaaccacagcaac
agtgcggttcctcaggacaaccggagagtgttgttgccaggtgggaaaggtcccgcttac
ccacccggtgtggctgcgtgggcggccagcacccactacctgaatcccgcaagcggctcc
gtgggaaccaaccacgtttcgacctctaccgcgcccactgcgtccgcccccgccaacgga
cagtcgtcacacctcaaatggctgccggctatggaagaaatcccagaaaattacgaggag
gacgactttgacggggtctttcaccagggtcacccggggggcaagcgcaccgaggttggc
cacgaggccgccatggagagcagcgagctggtgcacgagatcaacaaacttctgcaggac
gtccggcagaactag
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