Takifugu flavidus (sansaifugu): 130527816
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Entry
130527816 CDS
T09160
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130527816 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130527816 (exosc1)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130527816 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
130527816 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
SH3-C_UBE2O
Motif
Other DBs
NCBI-GeneID:
130527816
NCBI-ProteinID:
XP_056892571
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All DBs
Position
6:12445086..12447150
Genome browser
AA seq
198 aa
AA seq
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MHHNKMSAKVCIPGEKLCSAEDCVLGTGVYLRHGYIHSSLAGYVVRKSEGKELPMISVVR
GTELQLLPDVGAIVTCKVTSINPRFAKVHILKVGSTSLKDHFKGTIRKEDVRATEKDKVE
IYKSFRPGDIVLAKVMSIGNVESSYLLTTAENELGVVVAHSESGAVMVPISWSEMQCPLT
YAKELRKVARVQAKHLEA
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgcatcacaacaaaatgtccgcgaaagtttgtataccaggtgaaaagctgtgcagtgct
gaagactgtgttctgggcacaggggtatacctgaggcatggctacatacactcctcacta
gcaggctatgtcgttaggaaaagtgaggggaaagagctacccatgatctccgtggtgaga
ggaacagaattacaactgctaccagatgtgggagcaatagtcacctgtaaggtgaccagc
atcaacccaagatttgccaaagtccacatcctaaaggtcgggtctacgtcattgaaggac
cacttcaaaggaacaatcagaaaagaagatgttcgtgcgacagagaaagacaaggtggag
atttacaaaagcttcaggcctggtgacattgtcctggcaaaagttatgtccattggcaat
gtggagtccagctacctgttgacaacagcagagaatgaactgggggtggtggtagcacac
agtgaatcaggtgcagtgatggttccaatcagttggagtgagatgcagtgcccactgact
tatgctaaagagttacgtaaagttgcacgagtgcaggccaaacatctagaggcatga
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