Takifugu flavidus (sansaifugu): 130528174
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Entry
130528174 CDS
T09160
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03013
Nucleocytoplasmic transport
tfs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130528174
03015 mRNA surveillance pathway
130528174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130528174
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130528174
5.6.2.5 RNA 5'-3' helicase
130528174
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130528174
mRNA cycle factors
Common to processing body (P body) and stress granule
130528174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
130528174
NCBI-ProteinID:
XP_056893193
LinkDB
All DBs
Position
7:12019591..12028852
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGHTQSQLDNQLNG
PDDGLHNGGMDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPCATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGAHMRLMQGDEICLRYKGDLAPLWKGI
GHVIKVPDNYGDEIAIELRTSVGAPVEIPHNYQVDFVWKSTSFDRMQSALKTFAVDETSV
SGYIYHKLLGHEVEDVTIKCQLPKRFTANGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVS
FLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC
VGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDF
QWPQPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYE
GQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPR
RLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPR
KLVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRPSNMYFQTHDQIGMIGAAASHL
AALNIPIPFNLVMPPMPPPSYQGQTNGPAAGRGAMKGKSGRGGRQRIRGSGNQGVGHMPN
SQISQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgaggcttacgggccgagttctcagaccctcaccttcctggacaccgaggaa
accgagttgctcggcgcggacacccagggctccgaatatgattttaccgacttcaccctt
cccagccagacccaaacccaaggccatacccaaagccagctggacaaccagctcaacggt
cccgacgatgggctccacaacggcgggatggatgattctgtggccaaagcaagccagctg
ttagccgagctcaactttgaggaggatgaagaagacacttactacaccaaagacctgccc
gtgcatgcgtgcagctactgtggtatccatgacccagcgtgtgttgtgtactgcaatacc
agcaagaagtggttctgtaatggacgcggcaacacatctggcagtcacattgtaaatcac
ctggtgagagccaaatgcaaagaggtgacgttgcataaagacgggccactgggggagacc
gtgcttgagtgttacaactgcggctgtcgcaacgtcttcctcctgggcttcatcccggcc
aaggctgactccgtggtggtgctactctgcaggcagccgtgtgctagccagagcagcctg
aaggacatcaactgggacagctcacagtggcagccgctgatccaggaccgctgcttcctg
tcctggctggtgaagattccgtcggagcaggagcagctccgggctcgtcagatcactgca
cagcagataaataagctggaggagctgtggaaggacaatccctgtgctaccctggaagac
ctggagaagcctggagtggacgaggaaccacagcatgtgctgctgcgctacgaggatgcc
taccagtaccaaaacatcttcggccctctggttaaactggaggccgactatgacaagaag
ctgaaggagtcccagacccaagacaatataacggtcagatgggacctggggctgaataaa
aagcgcatcgcctatttcactctgcccaagacggattcaggtgcacatatgcggctgatg
caaggcgatgaaatctgcctgcggtacaagggcgatctggccccactgtggaaaggcatc
ggccacgtcatcaaagtccctgacaactacggggatgaaattgccattgagctgcggacc
agcgtcggcgcaccagtggaaatcccccataactaccaggtggatttcgtgtggaagtcc
acatcttttgacaggatgcagagcgccctgaagacgtttgcagtggacgagacttctgtg
tctgggtacatttaccacaaactgctgggtcacgaggtggaggacgtcaccatcaagtgc
cagctgccaaagcgtttcactgccaacggcctccccgacctcaatcactctcaggtttat
gctgtgaagacggtgctgcagaggcctctcagtctgatccagggtcctcctggcactggg
aagaccgtcacctccgccactatcgtttaccacctctcccgtcaaggcaacggaccagtg
ctggtgtgtgcgcccagcaacatcgccgtggatcagctgactgagaaaatcgacaagacc
ggactgaaggtcgtgaggctgtgcgcaaagagccgagaggccatcgagtcaccggtgtcg
ttcctggctctgcacaaccagatcagcaacatggacagcatgccggagcttcagaagctg
cagcagttgaaggatgagacgggtgagctgtcgtccgctgatgagaaacgctacagggcc
ctgaaacggaccgctgagagggaactgctcatgaatgctgacgtcatctgttgtacctgc
gttggagctggtgaccctcgtttagccaagatgcagttccgctccatcctcattgacgag
agcacccaggccaccgagccagagtgtatggtccctgtggtgctgggagccaaacagctc
atcctggtgggagatcactgccagttgggtcctgttgtgatgtgtaagaaggcagccaaa
gctggcctctcccagtccctgtttgaacgcctggtggtgttggggatccgaccgatccgc
ctgcaggtccagtaccgtatgcacccagcgctcagtgccttcccctccaacatcttctat
gaaggctccctgcagaatggcgtcactgcaggtgatcgcatcaagaaagggtttgacttc
cagtggcctcagcctgagaagcccatgttcttctacgtgactcagggtcaggaggaaatc
gctagttctggaacctcatatcttaacagaactgaagccgccaacgtggagaagatcaca
accaggctgctgaaggctggagcaaagccagatcagattggcatcatcaccccatacgag
ggtcagcgctcctacctggtccagtacatgcagttcagtggctcgctgcacaccaaactc
taccagcaggtagaaatagccagtgtagatgccttccagggcagagagaaagatttcatc
atcctgtcatgtgtgcgtgctaatgagcaccagggcatcggcttcctgaacgacccccgt
cgcctgaacgtggctctgacccgagcaaagtatggtgtgatcatcgtggggaaccccaag
gccctttccaagcagccactttggaacaatctgctcaacaactacaaggagcaaaaggtt
cttgtagaaggacccctcaacaacctcagggagagcctcatgcagttcagcaagccccgc
aagttggtcaacaccatcaaccctggagggcgttttatgagcactgccatgtacgacgct
cgagaagccctcatccccggctctgcttacgaccgcagcaacactgctgggcgtccatca
aacatgtactttcaaactcacgaccagatcggtatgattggagcggccgccagtcacctg
gctgctctgaatattcccatacccttcaacctggtgatgccgccgatgcctccgcccagt
taccagggccagaccaacggccctgctgcaggtcgtggcgctatgaagggtaaatctggc
cgtggcgggcgccagaggatccgtggttctgggaaccagggggttggtcacatgccaaac
agtcagatcagccaggatggggcttcccagtcattctcccaggggccactgacacagggt
tacatctccatgagccagccttcccagatgagccagcccggactctcccagccagagctt
tcccaggacagctacctgggcgacgagttcaagtcacaaatcgatgtggctctgtcccag
gactcgacataccagggcgaacgtgcataccagcatggcggggtaactggactgtctcag
tactag
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integrated database retrieval system
