KEGG   Takifugu flavidus (sansaifugu): 130530316
Entry
130530316         CDS       T09160                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tfs  Takifugu flavidus (sansaifugu)
Pathway
tfs04382  Cornified envelope formation
tfs04510  Focal adhesion
tfs04512  ECM-receptor interaction
tfs04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tfs00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130530316 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130530316 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130530316 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130530316 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tfs04147]
    130530316 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:tfs00536]
    130530316 (col4a1)
Exosome [BR:tfs04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130530316 (col4a1)
Glycosaminoglycan binding proteins [BR:tfs00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130530316 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130530316
NCBI-ProteinID: XP_056897359
LinkDB
Position
1:complement(11754828..11781830)
AA seq 1639 aa
MLLPSCTLLLLAALHCADLTAAEGCGAACGKCDCSGVKGAKGERGYPGLQGNMGFPGMQG
PEGPPGPMGTKGDLGDPGAPGQKGVRGPPGQAGFPGNPGLPGINGNDGPAGPPGIPGCNG
TKGAQGISGAPGFPGLQGPPGIPGIPGIKGDAGGVIGIIPLKGDRGFPGVPGLPGASGPS
GPIGPPGPRGSQGPKGDPGPPGPPGEKAEKLSFVGEKGEKGDQGFRGPPGPPGPPAQGVE
GQITVHIPGPPGERGFQGDKGDKGFCIPHEFGVKGEPGPPGPRGKPGKDGDVGSKGEKGF
QGAPGYPGSQGEKGDRGPPGFGSGAPGPAGPRGLPGLQGEKGFPGPQGEAGPPGRHLEGP
RGERGLKGDQGEKGDMGIEGESLFGPPGQPGIPGLPGPPGEPIDPNECDVATGAPGPPGP
PGLQGELGQKGDKGDTCFQCESSGLPGLPGPQGPKGDHGPPGSVGRKGDKGEPGAAGQPG
TPGFPGSPGLLGAPGPVGEPGDIFVAPGLKGEKGLTGVPGSPGMPGIKGEPGRTGIPGIP
GLKGEPAKEGIKGERGPSGDPGTIGPPGERGPPGVPGFGRPGEHGEKGSQGRSGSPGIPG
PPGAKGEPGQGVGSPGPQGVPGLQGEPGRPGVQGERGLPGDAGIPGFPGQKGEIGPSGIG
LPGLTGPKGISGIPGDAGLPGLPGKQGIDGLPGAPGPYGQKGEPGQGLPGPKGSQGIPGL
TGFPGEKGSIGLPGIPGQDGHAGPPGPQGVKGEVGPPGPPGLSGLQGPPGKGTPGLPGPQ
GPPGEPGPFGREGVKGERGYPGPPGLDMPGPKGDKGAPGFPGVPGTKGLPGVEGLQGRDG
LIGTQGPKGEMGVIGTPGVPGFPGLPGQPGSPGRRGDPGVTGPRGDIGESGIKGERGDPG
LQGPAGNMSDVDMEHMKGEKGDIGVLGEPGFTGPKGTRGMPGDPGQRGADGEPGLPGQPG
EKGDSGFPGEPGSMGPPGQKGSLGEMGLPGSMGPKGTKGNFGTPGHPGFRGTDGEKGEKG
LAGEPGIGIPGPPGQRGDKGQPGFPGLPGEKGVRGFEGMPGKPGLEGIKGDKGSIGYTGQ
PGRPGEKGVPGLPGPAGERGVDGRPGEAGLQGPPGSPGQKGEAGVDGIPGSSGERGDPGV
PGRGFPGQPGVDGTKGEKGSPGLPGTPGHPGVPGTKGDKGLPGTPGPRGDLGERGLPGVS
LEGPKGDRGETGQPGERGSQGLPGPPGLQGRDGLKGDKGEQGNPGFQGELGQKGETGVPG
FPGPSGLPGIDGQKGEQGQKGVPGFPGTKGIAGNAGFKGEDGDRGFPGQKGNDGPPGPPG
RHTFIKGDIGFPGDPGLPGPQGPAGFPGPKGQQGVTGISGPKGEEGFPGIHGQHGAKGEP
GLPGPQGPRGYPGPTGPDGVPGQLGPPGPSSMDHGFLVTRHSQTVDVPQCPEGTSLIFDG
YSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMP
MSMAPITGHSIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPYGWDSLWIGYSFVMHTSAG
AEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSDMFTKPVPTTL
KAGDLRTHISRCQVCMKRT
NT seq 4920 nt   +upstreamnt  +downstreamnt
atgctgttaccgtcctgcacgctacttctgctggcggctctgcactgtgcagacctgact
gcggctgagggttgtggggcagcatgtggaaaatgtgactgcagtggcgtgaaaggagca
aagggtgaacgtggatatccaggacttcaaggtaatatgggattcccagggatgcaggga
ccggaaggtcctccaggaccaatgggcacaaagggggatttgggtgatcctggagctcct
ggacagaaaggagttaggggtcctccaggccaagcaggtttcccaggaaatccaggacta
ccaggtatcaacggaaacgacggcccagcaggtccgccaggaatcccaggatgcaacggg
actaaaggagcacaaggaatcagcggcgctcctggttttcctggtcttcaaggacctcct
ggcatcccaggaattcctggaataaagggtgacgccggtggtgtgattggaattatcccc
ctgaaaggagacagagggttccctggagtgcctggattacctggagcaagtggaccttca
ggacctatagggccacctggacctcgtggctctcaaggacctaaaggagaccctggaccc
cccgggcctccaggagagaaggctgagaaactgagctttgtgggagagaagggcgaaaag
ggtgaccaaggcttccgtggcccacctggtcctcctggacctccagctcagggagtggaa
ggacagataacagtgcatattccaggacctccgggtgagagaggattccagggtgacaaa
ggagacaaaggtttctgcattccacatgaatttggtgttaaaggtgaaccgggaccacct
ggcccaagaggtaaacctggcaaagatggagatgttgggtcaaagggagagaagggattc
caaggagctcctggatatcctggttcccagggagagaagggagaccgaggaccaccaggt
ttcggaagtggagccccgggtcctgcaggtccgcgaggtctcccgggattacaaggagaa
aaaggctttcctggaccacagggagaggcaggtccaccaggtcgacatttagaagggcca
cggggagagagaggcctgaagggggaccaaggtgagaaaggagacatgggtatagaagga
gagtctctgtttggaccacctggacaacctggaatccctggcctccctggacccccggga
gaaccgattgaccctaatgagtgtgacgttgccactggagccccgggcccacctggacct
cctggactacaaggagaattgggacagaaaggtgacaaaggagacacctgttttcagtgt
gaaagttctggtctacctggcttacctggcccccagggtcctaaaggagatcatggaccc
cctggatcagtaggccgtaagggagataaaggtgaacctggtgctgctggacaaccagga
acacctggttttccaggtagtccagggttattgggagccccaggtccagttggagagcct
ggagacatttttgtagcccctggtctaaaaggggaaaaaggtctaactggtgtgcctgga
tcaccaggaatgccaggaataaagggagagccaggaagaactggaattccagggatacct
ggcctcaaaggagaacctgccaaagaaggtatcaagggtgagcgtgggcctagtggggat
cctggcactattggccctccaggagagcgaggcccacctggtgtgccaggatttggtcgc
cctggcgagcatggagagaagggtagccagggaaggtcaggtagtcctggaatccctgga
ccacctggtgctaaaggagagccaggtcaaggtgtaggctcccctggacctcaaggagta
cctggactacaaggagaaccaggcagacctggtgttcaaggtgagaggggtctgccagga
gatgcaggaatcccaggttttcctggacaaaaaggtgaaattggaccctcaggaattgga
cttccaggcttaactggccctaaaggaatcagtggaattccaggagatgcaggattacca
ggactaccaggaaagcaaggaatagatggattaccaggagcacctggtccatatggacaa
aaaggtgaaccaggacagggtctgcctggcccaaaaggttctcagggcatcccaggactt
actgggttcccaggagagaagggtagcattggattacctggcattcctggacaagatggt
catgcaggaccaccaggacctcagggggtgaaaggtgaggtgggaccaccaggacctcct
ggtttgagcggtttacaaggtcctccaggaaaaggcacaccgggacttcctggaccacaa
ggtccacctggagagccaggaccatttggtagggaaggtgtgaagggagaaaggggctac
ccaggtcctcctggcctggacatgccagggcctaagggtgacaaaggagcaccaggcttt
ccaggagttccagggacaaaaggactgccaggggtagagggattacaaggcagagatggc
ctgatcggaacccaaggtccaaaaggtgagatgggagtaattggaacaccaggagtacca
ggctttcctggattacccggacaaccaggatcgcctggtcggagaggtgatcctggtgtt
actggtccaagaggtgatattggagagtctggaattaaaggagaaaggggtgatccaggt
cttcagggccctgctggaaacatgagtgatgttgacatggagcatatgaaaggagagaaa
ggagatattggtgttttaggtgagcctggattcactggaccgaagggcactcgtggaatg
cctggagaccctggacagcgaggcgcagatggagaacctggtctaccaggacaaccaggt
gagaaaggagactctggttttcctggagagcctggcagcatgggaccacctgggcagaaa
ggcagtcttggagagatgggattaccaggctcaatgggtccaaagggcactaaaggcaac
tttggcacgccaggccatcctggatttagaggtacagatggcgaaaaaggagaaaagggt
ctagctggtgagccaggtattgggattccaggacctccaggacaaaggggtgataaaggt
cagccaggtttcccaggattgcctggagaaaagggtgtgaggggctttgagggcatgcct
ggcaaaccaggactagaaggaataaagggagacaaaggaagcatcggatatacaggtcag
ccaggcagaccgggtgaaaaaggagtacctgggctcccgggacctgcaggagagcgtggt
gttgatggtcggcctggtgaagcgggcttgcagggacctcctggttctcctggacagaag
ggagaggctggagttgatggcatcccaggatcctcaggagagaggggagatccaggtgta
cctggtcgaggtttccctgggcaaccaggcgtggatggcaccaaaggtgaaaagggtagt
ccaggccttccgggtaccccaggccatcctggtgtacctggtactaaaggtgacaaagga
cttccaggtacaccaggtccccggggagatttaggagaaaggggactccctggcgtctct
ttagaaggcccaaagggagataggggagaaacgggacaaccaggagaaagaggctcccaa
ggattaccaggaccccctggtttgcaaggcagggatggcctcaaaggagataaaggagag
cagggtaacccgggtttccagggagagttagggcaaaagggtgaaactggagttcctgga
tttcctggaccatctggtctcccgggtattgatggacagaagggagaacagggacaaaag
ggtgtccctggtttcccaggtaccaagggtattgctggaaacgccggattcaaaggagaa
gatggtgatagaggattccctggacagaagggcaatgatggcccccccggcccccccggt
cggcatacctttataaaaggagacattgggtttcctggagatccaggcttacctggaccc
cagggaccagctgggtttcctggaccaaaaggacagcaaggtgtgacgggaatatcaggg
cccaaaggtgaagaagggttccctggaattcatggtcagcatggagccaaaggagagcct
ggccttcctggtccacagggacctagaggatatccaggtccaacgggacctgatggtgtt
ccaggtcaattgggcccacctgggccctcctcaatggatcatgggttcctggtgacccgt
catagtcaaacagtggacgttccccaatgtcccgagggaacctcattaatatttgatggc
tactccttgctctacgtgcaggggaatgaacgctctcatggacaagatttaggtacagca
ggcagttgcctgaggaagttcagcccaatgcccttcctcttctgcaatatcaacaacgtg
tgcaactttgcttctcgtaatgactactcctattggctcacttccccggagcccatgccc
atgagcatggcacctatcactggacacagcatcaagcccttcatcagcaggtgtgctgtg
tgtgaagctccagccatggtgatagcagttcacagtcagaccatcatgatcccaccgtgc
ccctacggctgggactctctctggattggctattcctttgtgatgcacactagcgctggt
gccgagggctcgggacaggctctggcctcccctggttcctgcctggaggaattccgcagt
gctccattcatcgagtgccacggccgaggaacctgcaactactatgccaactcctacagc
ttctggctcgctaccatcgaagacagcgacatgtttacgaaacctgtcccaacaacgcta
aaggcgggagacctccgaacccacataagccgctgccaggtttgcatgaagaggacataa

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