Takifugu flavidus (sansaifugu): 130530549
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Entry
130530549 CDS
T09160
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130530549 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfs03041
]
130530549 (sf3b1)
03036 Chromosome and associated proteins [BR:
tfs03036
]
130530549 (sf3b1)
Spliceosome [BR:
tfs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130530549 (sf3b1)
Complex B
130530549 (sf3b1)
Complex C
U2 SnRNP specific factors
130530549 (sf3b1)
Chromosome and associated proteins [BR:
tfs03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130530549 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
130530549
NCBI-ProteinID:
XP_056897786
LinkDB
All DBs
Position
1:complement(14543834..14555182)
Genome browser
AA seq
1314 aa
AA seq
DB search
MAAIAKTHEDIEAQILEIQSKKATLVEEGQQGVGLDSTGFFDQEIYGGSDSRFKGYVTSI
AANEQEEDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KQRRRQMIISPERLDPFADGGKTPDPKVQVRSYVDVMLEQNLSKEEREIRLQLAEKAKSG
DLKAVNGSVSSQAAAKRKRRWDQTADQTPTNATPKKMSSWDQADSTAETPGHTPAHTPVN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVEETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRSVKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKATLRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYVL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgatcgccaaaactcacgaagacatcgaggcccagatccttgaaattcaaagt
aaaaaggccactctggtagaggagggacagcaaggagtgggccttgactccactggcttt
tttgaccaagaaatctacggcggtagcgacagccgcttcaaaggatatgtcacatctatt
gctgccaatgaacaggaggaagacgacgaagaagattcttcaacaagcttgctgggacaa
aagaagccaggataccatgcacctgtggcaatacttaatgccattccacagtcagatgag
caatatgatccatttgcagagcatcgtccacagaagattgctgagcgggaagatgaatac
aaacaacgtcgcaggcagatgatcatctctcctgagcgtctggacccttttgcagatggg
ggcaaaacaccggaccccaaggtacaagtcaggtcatatgtggatgtcatgttggagcag
aacctctccaaagaggagagagaaatccgtctgcagctggcagagaaggccaagtcaggg
gatctcaaagctgtcaatggctcagtgtcctcccaggctgccgcaaaacggaagcgccga
tgggaccagacagctgaccaaacccccactaatgctacgcccaagaagatgtccagctgg
gaccaggccgactccactgcggagactcctggccatacaccagcacacactccggtaaac
agccgatgggatgaaaccccaggtcgcccaaaaggaagcgagacaccaggggccacccct
agtacccgcatgtgggaccccacgccaagtcacacacctgctggagccgccacacctggg
agagatacacccggccatgccacaccaggacatggtggagccacgggaagtgtgcgtaag
aaccgctgggatgaaacccccaagaccgagagggagaccccgggacatggaagcggctgg
gctgaaacacctcgcacggataggggagatgaatctgttgaagagactcccaccccaggt
gcaagtaagaggaagtctcggtgggatgagaccccagccagtcagatgggatcctcaaca
ccactactgaccccaggaaaaacgccgataggaacacctgctatgaacatggccacgcca
acaccaggtcacctgatgagcatgactccagagcagctccaagcatggaggtgggagaga
gagattgatgagaggaaccgacctctcacagatgaggagcttgatgccatgttcccagag
ggatacaaggtcctgcctcccccagcaggttatgtacccatccgtactccagcccgtaag
ctttcagctacaccaactcctattggtggcatgacaggcttccacatgcaggtagaggac
cgctcagtaaaacagatgaacgaccagccttcaggaaacctccccttccttaaacctgat
gatattcaatactttgacaaactactggttgaggtggacgagtccacactcagtccagaa
gagcagaaagaaaggaaaatcatgaaactgctactgaaaataaagaatggaacacccccc
atgagaaaggcaaccctgcgtcagatcacagacaaggctcgggagtttggagcaggtccc
ttgttcaaccaaatcctgccactgctcatgtcacctacactggaggaccaggaacgccat
ctgctggtcaaagttattgaccgcattctttacaaactagatgatttggtgcgcccatat
gtgcacaagatcctggtggttattgagcccctgctgattgatgaggactactatgccaga
gtagaaggaagagagatcatctcaaacttggcaaaggctgccggtttggctacaatgatt
tccacaatgagacctgacattgacaacatggacgagtatgtcaggaacaccacggccaga
gcctttgctgtagtggcttcagctcttggtattccctctctcctgcccttcctcaaagct
gtgtgtaaaagcaagaagtcctggcaagcccgacacacaggcatcaagattgtgcagcag
attgccatcctgatgggctgtgcaatcctaccacacttgcgcagcttggtggagattatt
gaacatggtctggtggatgagcagcagaaggtcaggactatcagtgctttagctatagct
gcacttgctgaagctgctaccccatatggtattgagtcctttgactcggttctcaaacca
ctgtggaagggtatccgacaacacagagggaagggtttggctgctttcctcaaagccatt
ggttacctgatcccattgatggatgcagagtatgcaaactactacaccagagaggtgatg
ctcatcctcatcagagagtttcagtcccctgatgaagagatgaagaagattgtccttaag
gtggtgaagcagtgttgtggcactgatggagtggaagccaattacattaaaacagaaatc
ctgccacccttcttcaagcacttctggcaacacagaatggctctggacaggcgcaactac
agacagttggttgacaccacagtggagttggccaacaaggtgggggccgcagaaatcatt
tctcgtatcgttgatgacctgaaagatgaagcagagcagtacaggaaaatggtcatggaa
accattgaaaaaattatgggcaacctgggtgcagctgacattgaccacaagcttgaggag
cagctgattgacggtatcctgtacgccttccaggaacaaacaacagaggactccgtgatg
ctgaatggttttggcacagttgtaaatgcccttgggaaacgtgtaaagccctacctgcct
cagatctgtggtacagtgctgtggcgtctgaacaataagtcggccaaagtccgtcagcag
gctgccgacctcatctcccgcacagccgtggtcatgaaaacatgtcaggaggaaaagctg
atgggtcacttgggtgtggtgctgtacgagtacctgggagaggaataccctgaagtgttg
ggcagcattctgggagcactcaaggctattgttaatgttatcggcatgcacaagatgacc
ccaccaattaaagacctgcttcctcgcctcactccgatcttaaagaacagacatgaaaaa
gtgcaggagaattgcatcgacctggtggggaggattgccgataggggtgccgagtatgtg
tcagcaagggagtggatgaggatttgttttgaactgctggaacttttgaaagctcacaaa
aaagccatccgcagagctacagtcaacacttttggttatatcgcaaaagccattggcccc
catgatgtcttggcaacgctcctcaataatctgaaggtgcaggaacgtcagaacagagtt
tgcaccactgtggctatcgccattgtggcagagacctgttcaccttttaccgtgctgcct
gccctcatgaacgagtaccgcgttccagagctgaacgtgcagaatggcgtgctcaagtcc
ctctccttccttttcgagtacattggagaaatgggcaaagattacatttacgcagtgaca
ccattgctggaggatgctctcatggaccgggacttggtccacagacagacggccagtgct
gtggttcagcacatgtctctgggtgtgtacggcttcggctgcgaagattccctcaaccac
ctcctgaactatgtgtggccaaacgtgtttgagacgtcgcctcatgtcatccaggctgtc
atgggagccctggaaggactgcgggttgccatcgggccctgtcgcatgctgcagtactgc
ttgcagggcctcttccatccagctcgcaaggtcagagatgtgtactggaagatatacaac
tccatctacatcggctcacaggacgccctcatcgcccactatcctcaagtgtataacgat
gagaagaatgtttacgtccgctacgagctggagtacgtcctgtaa
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integrated database retrieval system
