Takifugu flavidus (sansaifugu): 130531657
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Entry
130531657 CDS
T09160
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03008
Ribosome biogenesis in eukaryotes
tfs03013
Nucleocytoplasmic transport
tfs03015
mRNA surveillance pathway
tfs05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130531657 (nxf1a)
03015 mRNA surveillance pathway
130531657 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
130531657 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130531657 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130531657 (nxf1a)
03009 Ribosome biogenesis [BR:
tfs03009
]
130531657 (nxf1a)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130531657 (nxf1a)
mRNA cycle factors
Stress granule specific factors
130531657 (nxf1a)
Ribosome biogenesis [BR:
tfs03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
130531657 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
130531657
NCBI-ProteinID:
XP_056899722
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All DBs
Position
9:11864625..11872769
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AA seq
657 aa
AA seq
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MAHTFYRKSYPNLAVVARVQNDDSGNLMVTREVIRPNFMTSGEHDDRTMPQFRNRKGKGM
GRSFDRPRRDRQRGGHSGNVGGPGPRMRLGDADADVVMSDNSQDSSSQHRFKPYGRPFRK
GGNGRFDRDGRQGKGKGGGFRGGNSGGGGKNQTGWYKVTIPHGKKYDKKWLLGALQNICS
VPFKPVQYHIDHSRAHFYIDDSATANALHKCTHKITDRDGYKVEVHVNPSAPPSYLLSEL
KPEHLEPLKQCMSKRFDGSQQALDLNNIRTDPDLVSQNIEVILNRKTNMEAVIKIIEENI
PELTSLNLSNNRIHKLDDLAELVTKVPHLKTLNLSNNELKSDRELDKLKGLKLVELWLNR
NPLCDLFKDQAVYISAVRERFPRLLKLDGQDLPPPIGFDVETPTTIPPCKGSCFCSDDIK
ALILRFLQQYYSVYDSGDRQPLLDAYHDGASFSLTTPYSTQNPSRSSLGEYHKDSRNLKR
LKDSTIRYRLLKHTRLNVVAFLNELPKTQHDIASFTVDVNTYTHTLLAFTVSGIFKEVAV
DAKSRESTMAFSRVFITVPAGNTGLCIVNDQLFIRMATTEEIRRAFVAPAPTPSSSPVPT
LTASQQDMLTAFSQKSGMNLEWSQKCLQDNAWDFNAAAQVFTQLKMEGKIPDVAFIK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcccatactttttacaggaaatcgtaccctaacctagctgtggtggcacgtgtgcag
aatgacgactctggaaacttaatggtgacgagagaagtcataagacctaattttatgact
tcaggagaacacgatgatagaacaatgccgcagtttcgcaaccgtaaaggaaaaggcatg
ggcaggtcatttgacaggccccgccgagaccgccaacggggaggccactcaggaaacgtg
ggtggtcctgggccaaggatgcggcttggtgacgctgatgcagatgttgttatgagtgat
aattcacaggatagcagctcccagcatagattcaagccatatggaagaccttttaggaaa
ggaggaaatggtcgctttgacagagatgggcgacagggcaaaggtaaagggggtggcttt
agaggaggcaacagtggtggaggtgggaaaaatcaaacaggctggtacaaagtaacgata
ccacatggaaagaaatatgacaagaagtggctattgggagctcttcagaacatttgctca
gtgccttttaaacctgtgcagtaccacattgaccacagcagggctcatttctacattgat
gattcggctactgccaatgccttgcacaaatgcactcacaagatcaccgacagagatggt
tataaggtggaggtgcatgtgaacccctctgctccaccctcttacctcctttctgagctg
aagcccgagcacttggagcctctaaagcaatgcatgtcgaaacggtttgatggctcccaa
caggcactggatttgaataacattcgaacagacccagatctagtgtcccagaacattgaa
gtcatcttgaatagaaaaacaaacatggaagctgtcatcaagatcattgaagaaaacatt
ccagagctgacaagtttgaacctaagtaacaatcgtatccacaagcttgatgaccttgct
gaattggtcaccaaggttcctcatcttaaaaccctgaacctctccaacaatgagctaaag
tctgaccgggagctggacaagttgaaaggcctgaagttggtggagctgtggctgaacaga
aatcctttgtgtgaccttttcaaagatcaggctgtatacatcagtgctgtgcgggagcgg
tttccacgactccttaaactggacggtcaagacctgccccctcccatcggttttgatgtg
gaaacgcccaccaccatccctccgtgcaagggcagctgtttttgctcagatgatatcaag
gctctcatcctccggtttttgcaacagtactacagcgtatacgattcaggtgacaggcag
ccgctcctggatgcttaccatgatggagcgtccttttccctcacaacaccctactccacc
cagaacccctcaaggagcagtctgggagagtatcataaagacagtcgaaacctgaagagg
ttgaaagactcaacaatacggtaccggctgctcaagcacacgcggctaaatgtagtggct
tttctgaacgagttgcccaaaactcagcacgacattgcctccttcactgttgatgtgaac
acctacactcacaccctactggcgttcacagttagcggaatctttaaagaagttgctgtt
gatgcaaagtcccgtgagtccactatggcgttctctcgagtattcatcacagtcccagct
ggaaatactggtctgtgcattgtcaacgaccagcttttcattcgaatggcaacgacagag
gagatccggcgagcctttgtcgctcctgccccgactccatcttccagccctgtcccgaca
ctaacggcatcacagcaagatatgctcacagctttttcacagaagtctggcatgaacctg
gaatggtcccagaaatgtctgcaagacaacgcgtgggatttcaatgcagcagcccaagtt
ttcactcagttaaagatggaaggcaagatcccagatgttgcattcataaaatga
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