Takifugu flavidus (sansaifugu): 130533404
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Entry
130533404 CDS
T09160
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tfs00536
]
130533404 (col13a1)
Glycosaminoglycan binding proteins [BR:
tfs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130533404 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Pox_A_type_inc
Motif
Other DBs
NCBI-GeneID:
130533404
NCBI-ProteinID:
XP_056902743
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All DBs
Position
11:197561..297594
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AA seq
713 aa
AA seq
DB search
MEENQKWGATKMGEEKVGAPPRTSWRDVRGAALCVAASLLFSGLFVWISELQSRIGDLER
QQITACTRSAEQVEPLILGRLDHILEEKLAAHLSKRREAREAPHGCLCPPGESGPPGRPG
FPADKGSMGIPGRMGLKGQAGDKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGK
PGHNGAKGDVGERGPKGLPGEPGPKGEKGICGDYTHRGLFVQDLPLKTLAALRSSQALTL
KQGEPGAQGPPGLPGPPGPPGTPGLNGASGSPGKPGEPGKPGKDSRLLPGLKGEPGVPGP
KGDRGDIGPSGPEGPKGEPGLRGHPGSKVKSHQSVCCGWNISFIPCFTVKGEAGTSGTPG
IPGKRGYRGEKGQASSSLQGIKGEPGSPGLPGLMGPKGDKGEHGEKGPAGPTGEAGKMEM
NNNENDIRNIHLMGPPGLPGPPGLPGTKGEVGLPGPPGLDGEKGPRGKAGEQGPAGQPGP
EGPRGEVGIMGYPGHKGEKGDLGPSGSPGLDGPTGEKGAPGAPGSVGLPGVMGPRGEPGE
GGRAQMIYGPPGPPGPPGPVGPTGSQGASGPKGEPGLGIRGEKGATGQKGDKGDRGHLGL
PGAHGLDGRPGPVGLIGPAGMPGPAGPKGERGVKGDAGLSGPIGPQGIPGIVGPQGLKGN
RGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaccagaagtggggagccaccaagatgggtgaggagaaggtcggcgcgccg
ccgcgcaccagctggagagatgtgcgcggcgccgcgctctgcgtcgcagcatcgctgctg
ttctcgggacttttcgtgtggatttctgagctgcagtcgaggatcggtgatctggagcgg
cagcagatcaccgcctgcacgcgctctgccgagcaggtggagccccttattctgggccgg
ctcgaccacattctggaggagaagctcgcggcgcacctatcgaaacggagggaggcgaga
gaagctccacacggctgcctgtgtcctccaggtgagtcaggtcctcctggaagaccaggc
tttccggctgacaaaggaagtatgggaattcctgggagaatgggcttaaaaggacaagca
ggggacaagggagcaccaggtgagccaggtctgtccatcattggaccaagaggcccccct
ggacaacctggaaccagaggattcccaggctttcctggtccaattgggttggatgggaaa
ccgggtcacaatggagccaagggagacgtgggtgagcgaggccctaaaggactcccaggg
gaacctggacccaagggggagaagggaatatgtggagactatacacacaggggcctcttt
gtgcaggatctgcccctgaaaaccctggctgccttgcgctccagtcaggctctgacgttg
aagcagggtgagcctggagcacaaggacccccaggacttccagggccacctggaccccct
ggaaccccaggtctgaatggagctagcggttcacctggtaaacctggtgaaccaggaaag
ccgggaaaagactcaagacttttaccaggactgaagggtgagccaggtgttccgggacca
aagggtgatcgtggggatatcggcccatctggtcctgagggcccaaagggagaaccaggc
ctccgtggccatcctgggtcaaaggtaaagtcacatcaatctgtgtgctgtggctggaac
atttccttcatcccttgttttactgtgaagggagaggctggcacctctgggacccctggc
atccccgggaagaggggctacaggggagagaaaggacaagcaagtagcagcctccaagga
attaaaggagaaccaggttctccaggactgccaggcctaatgggcccaaagggtgacaaa
ggagaacatggagagaagggtccagcaggtccgactggggaagcaggaaaaatggaaatg
aacaacaatgagaatgacattcgtaacatacatctgatgggtccccctggattaccggga
ccccctggactccctggaaccaagggtgaagtgggtctacctggtcctccaggactagat
ggagagaagggaccacgtgggaaggcaggagaacaaggtcctgcaggtcaacctgggcca
gaaggccccaggggggaagttggcatcatgggatacccaggacacaaaggagaaaaagga
gacctgggtccatctggatcacctggtttagatggccctactggtgaaaaaggggctcca
ggggccccaggctctgttggattacctggtgtaatgggtcccagaggtgaaccaggagaa
ggaggaagagcacaaatgatctacggtcctccagggcccccaggacctccggggccagtt
ggtcctacagggtctcaaggagcatcagggcccaagggagaaccgggacttggcatcagg
ggtgagaagggagccacaggtcagaaaggtgacaaaggagacagaggtcatcttggactt
cctggggctcatgggttagacggcagacccggtccagtgggtctaataggaccagcaggt
atgccagggccagcaggaccaaagggagaaaggggtgtaaaaggagatgctggattatca
ggaccaattggacctcaaggcatccctggtattgttggaccacaaggactcaaaggcaac
cggggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaagga
gcacctggattagatgccccctgtcctttgggtgatgacggcttacctgtcccaggatgc
tggaacaaaggtcagcatcctttccagctggcgaagaagtaa
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