Takifugu flavidus (sansaifugu): 130533547
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Entry
130533547 CDS
T09160
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs04120
Ubiquitin mediated proteolysis
tfs04137
Mitophagy - animal
tfs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130533547 (prkn)
04120 Ubiquitin mediated proteolysis
130533547 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130533547 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tfs04131
]
130533547 (prkn)
04121 Ubiquitin system [BR:
tfs04121
]
130533547 (prkn)
03029 Mitochondrial biogenesis [BR:
tfs03029
]
130533547 (prkn)
Enzymes [BR:
tfs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
130533547 (prkn)
Membrane trafficking [BR:
tfs04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
130533547 (prkn)
Aggrephagy
Other aggrephagy associated proteins
130533547 (prkn)
Xenophagy
Other xenophagy associated proteins
130533547 (prkn)
Ubiquitin system [BR:
tfs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
130533547 (prkn)
Mitochondrial biogenesis [BR:
tfs03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
130533547 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
OTU1_UBXL
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
130533547
NCBI-ProteinID:
XP_056903040
LinkDB
All DBs
Position
11:9147128..9150948
Genome browser
AA seq
480 aa
AA seq
DB search
MIVFVRYNLGPEVVVELQEEATVAELKEVVGQQQGVQPDLLRVLFAGRELKSTSTLQGCD
LPEQSTVHIIVPSPASSSYKTLLLPEHLSQGEEENHDSLTRLDLSASRLPTTSSTLGVIL
ERNDSEGVGATAGGGGGGAEAALGGDSAVLQSAGAKDHSVRPRSTFFVYCKSCKLVQPGK
LRVRCRSCRQATLTLSRGPSCWDDVLLQSRVHGVCHSDGCHGTEAEFYMKCASHPTSDND
HSVALDLIMTNSRDVPCIACTDVMDVVLVFECLARHVICLECFRHYCQVRLNERQFVYDP
AVGYSLPCAAGCINSLIKEVHHFRILGEHQYDRYLQYGAEECLLRSGGLMCPSPGCGAGL
VPPDDSRRVECDRQIGCGFVFCRICREGYHEGGCLATQSQTTAEGSQDFVVDEGASLRGR
WDQASLLLLQESTKPCPKCSAPVERNGGCMHMLCPLCKAEWCWLCGVFWNRECMGDHWFG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtgaggtataacctgggaccagaagtggtcgtagagctgcaggaagag
gccactgtagctgagttgaaggaggtggtgggtcagcagcagggagttcagccagatctt
ctgcgggttctttttgctgggagagagctgaaaagcacctctacactgcagggctgtgac
ctcccagaacaaagcaccgtgcacattattgtcccttctccagcttcctcttcctacaag
accctccttttgccagagcatctgtcccaaggagaggaagagaatcatgacagcctgact
agattggaccttagcgcttcacgacttcccacaacctcttctacattgggtgtgatccta
gagaggaatgattcagaaggagtgggagcaacagctggaggaggaggaggaggagcagaa
gcagcactgggaggagacagtgcagtactgcagtctgcaggtgcaaaagaccacagcgtg
cgtcctcgcagcacattctttgtctactgtaaaagctgcaagttggtccaacctggaaaa
ttgagagttcgctgccgaagctgtagacaggcgacactgacgctcagcaggggtccatcc
tgctgggatgatgttctcctccaaagtcgtgttcacggtgtgtgtcattcagatggttgt
catggcactgaagctgagttctacatgaagtgtgcatcacacccgacctcagataatgat
cactctgtggccctcgacctcattatgaccaacagcagagatgttccatgcattgcctgc
actgatgtcatggatgtggtcttggtctttgagtgtttagcgcgtcatgtgatctgtctg
gaatgtttccgtcattactgtcaggtccgactgaatgagagacagtttgtttacgatcct
gctgttggctactcgctgccatgtgctgctggctgcatcaactctctcattaaagaagtt
catcactttaggatcctgggagaacatcagtatgatcggtacctccagtatggtgctgag
gaatgcctgctgaggagcgggggactcatgtgtccctcacctgggtgtggggcggggctt
gtcccacctgatgacagcaggagggtggagtgtgacagacagatcggctgtggttttgtc
ttctgcagaatctgcagggagggctaccatgagggggggtgtctcgcaacacagtcccaa
accactgctgaaggctcacaggattttgtagtggatgaaggggcatctctcagagggaga
tgggatcaagcctcattgctcctcctgcaggaatcaactaaaccttgcccaaagtgttca
gcgcctgtggagagaaatggtggctgtatgcacatgctgtgtcctctgtgcaaggcagaa
tggtgctggctgtgtggagtcttctggaacagggagtgtatgggagatcactggtttggt
tga
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