Takifugu flavidus (sansaifugu): 130534480
Help
Entry
130534480 CDS
T09160
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130534480 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130534480 (ddx6)
03036 Chromosome and associated proteins [BR:
tfs03036
]
130534480 (ddx6)
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130534480 (ddx6)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130534480 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
130534480 (ddx6)
Chromosome and associated proteins [BR:
tfs03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130534480 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
130534480
NCBI-ProteinID:
XP_056904586
LinkDB
All DBs
Position
12:complement(3456187..3463063)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQIRGSVKPAGAPGGGGGGPQQHQVNQMKGAINNGNFQPAPT
TNAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAVVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVSQVQ
MIVLDEADKLLSQDFVGMMEEMLGFLSKQRQILLYSATFPLSVQKFMTSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEV
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgccaggacggagaacccggtgattttgggcttgtccaaccagaatggacag
atcaggggctcggtgaagcctgctggagccccgggtggggggggaggaggtcctcaacag
caccaggtcaaccagatgaagggtgccatcaacaatggcaacttccagcccgccccaacg
acaaacgccgtcatcaagcctggtgatgactggaagaagaatctgaaattgccccctaaa
gacatgaggatgaaaacttcggatgtgactgcaacaaaaggcaacgagtttgaggattat
tgcctaaagagggagctgctcatgggaatctttgagatgggctgggaaaagccatctccc
atccaggaggaaagtattcccattgcactatctggaagggacatcttggccagagccaag
aacggcacagggaagagtggagcctacctcattcccttacttgaacgcattgacctgaaa
agagactgcatacaagctgtggtcatcgttcccaccagagaactggctctgcaagtgagc
caaatctgcatccaggtcagcaaacacatgggcggagtcaaggtgatggcgaccacaggt
ggcaccaacctccgcgatgacatcatgagactggacgagacggttcacgtgatcatcgcc
actccgggcaggattctggacctcatcaaaaagggcgtggccaaagtcagccaagtgcag
atgatcgttctggatgaagctgacaaactgctgtctcaggactttgtgggtatgatggag
gagatgctgggcttcctgtccaagcagaggcagatcctgctctattctgccacgttcccc
ctcagcgtgcagaagtttatgacttcacatctgcagaaaccttacgagatcaacctgatg
gaggagctcacgctgaaaggtgtcactcagtattacgcttatgtcaccgagcggcagaag
gtccattgcctcaacaccttattttccaggctccagatcaaccagtccataatcttctgc
aactcctctcaaagagtggagctcctcgccaagaagatctcccagctgggatactcctgc
ttctacattcacgccaagatgagacaggagcatcggaaccgcgtgttccatgacttcaga
aatggcctctgcaggaatctggtctgcactgacttgttcacgaggggaatcgatatccag
gctgtgaatgtcgtgatcaactttgacttccccaaactgggagaaacgtaccttcatcgt
atcgggagatctgggcgcttcggacacctgggcctcgccatcaacctcatcacctacgac
gaccgcttcaacctgaaggggatcgaggagcagctgggaacagagatcaagcccatccca
ggcatcatcgacaagagcctgtacgtggcggaatatcacagcgagagcggagaagaagtc
aagccatga
DBGET
integrated database retrieval system
