Takifugu flavidus (sansaifugu): 130534777
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Entry
130534777 CDS
T09160
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03030
DNA replication
tfs03420
Nucleotide excision repair
tfs03430
Mismatch repair
tfs03440
Homologous recombination
tfs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130534777 (rpa1)
03420 Nucleotide excision repair
130534777 (rpa1)
03430 Mismatch repair
130534777 (rpa1)
03440 Homologous recombination
130534777 (rpa1)
03460 Fanconi anemia pathway
130534777 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfs03000
]
130534777 (rpa1)
03032 DNA replication proteins [BR:
tfs03032
]
130534777 (rpa1)
03400 DNA repair and recombination proteins [BR:
tfs03400
]
130534777 (rpa1)
Transcription factors [BR:
tfs03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130534777 (rpa1)
DNA replication proteins [BR:
tfs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130534777 (rpa1)
DNA repair and recombination proteins [BR:
tfs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130534777 (rpa1)
MMR (mismatch excision repair)
130534777 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
130534777 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
130534777
NCBI-ProteinID:
XP_056905296
LinkDB
All DBs
Position
12:5171743..5186654
Genome browser
AA seq
600 aa
AA seq
DB search
MTMLSEGAIEALSNGSDANDFVLQLTNIRKIEGGNGLPRFRVMMSDGRHTLSSFMLSTQL
NYLIEENTLSLYCICVLKRHVTNILKDGRRVVIILEIDVIKRAEEVAGRIGDPTPYTESQ
TKPQQTTSNHDSRPPLQPQNRNEMNRGFSKDFGKKGPAAMPSTPGGGSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFTVELVDESGEIRMTAFNQEVDKFFGLIEAGKV
YYISKCSLKIANKQYTSVKNDYEMTLNGESSIIPCEDSCDVPMVQCDFVSIGNLENKEKD
SIVDVIGVCKRTDEATHFTSKSNREMSKRTLHLMDMSGKLVTVTLWGEEAEKFDGSGEPI
IAIKGAKLSDFGGCSLSASFSSTLMVNPDIPEAHKLRGWYDKEGHSMEGQSLTEMRSGGG
GGNTNWKTLTDVKTEHLGHGEKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESNEA
AFDEVFQQANFNSFIFRSRVKLETYNDESRIKATVMEVKPVDHKDYSKRLIMNIRKLVVQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgctctcagagggtgccatcgaggctctatcaaatggcagtgatgcgaacgat
ttcgtccttcagctgactaatattcgtaagatcgagggaggtaatggtctacctcgtttt
cgggtcatgatgagtgatggacgacacacactgtcctccttcatgctctcgactcagcta
aactacttgatagaggaaaacaccctgtccctgtactgcatctgcgtactgaagaggcat
gtgacaaatatactgaaggatggaaggcgggtggtaattattttggaaattgacgtcatc
aagcgtgccgaagaggtagctggaaggataggtgatcctactccatacactgagagtcaa
actaaaccacagcagacaacatccaaccatgactcccgtcctcctttgcagccccagaac
agaaatgaaatgaacagaggtttcagcaaagactttgggaagaagggcccagccgcgatg
cccagcactccaggggggggatccaaggttgtacccatcgccagcctcaatccctaccag
tccaagtggacaatccgcgcccgcgtcaccaacaagagcagcatccgcacatggagcaac
tcccgcggtgacggcaagctcttcaccgtggagctggtggacgagagcggagagatccgc
atgactgcgttcaaccaagaggtggacaagttcttcggccttattgaagctggcaaggtt
tactacatctccaagtgctccctgaagatcgccaacaagcagtacacgtcagtgaagaac
gactacgagatgacgctaaacggcgagtccagcattatcccctgcgaggacagctgcgac
gtccccatggtgcagtgcgactttgtctccatcggcaacctggagaacaaagagaaagac
tccattgttgatgtgatcggagtgtgcaagagaacggatgaagccacccacttcacctcc
aagtccaaccgagagatgtccaagaggaccctccacctgatggacatgtctgggaagctg
gtgacggtcacgctgtggggagaggaggcagaaaagtttgatggttctggagagccgatc
atagccattaagggggcgaagctgtctgactttgggggctgttccctgtctgcatccttc
agtagcaccctgatggtcaaccctgatatcccagaagcccacaagctcagaggatggtat
gacaaagagggtcattccatggaggggcagtctttgacggaaatgagaagcggtggcgga
ggtggaaacaccaactggaagacgctaactgatgtcaaaacggagcatttgggccacgga
gagaaggccgactactacacctgcattgcaacgatcgtgtacctgcgcaaggagaactgc
ctttaccaggcctgccccagccaggactgcaacaaaaaagtggtggaccaacagaacgga
atgttccgctgtgagaagtgcgacaaagagttccccaacttcaagtaccgcctcatcctc
tctgccaacattgcagattacggagacaaccagtgggtgacttgcttccaggagagcgcc
gaggcaatcctgggccagaacgcagcttacctggggcagctgaaggagtcgaacgaagct
gccttcgacgaagtcttccaacaggccaacttcaactcgtttatcttccgcagcagagtg
aagttggaaacttataatgatgagtcacggatcaaagccacggtgatggaggtgaagcca
gtcgatcataaagactacagcaagaggttgatcatgaacataaggaaactggtggtccag
taa
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