Takifugu flavidus (sansaifugu): 130535464
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Entry
130535464 CDS
T09160
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130535464 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfs03021
]
130535464 (supt5h)
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130535464 (supt5h)
Transcription machinery [BR:
tfs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
130535464 (supt5h)
RNA polymerase I system
130535464 (supt5h)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
130535464 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
130535464
NCBI-ProteinID:
XP_056906493
LinkDB
All DBs
Position
12:complement(13634858..13645351)
Genome browser
AA seq
1108 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVEENEEETASPVGSDKVAEEEGEDLEDEEEYDEEEE
EEDDDRPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKEEAEVSNIEHMALDED
HSGSRRLQNLWRDSREEALGEYYMRKYAKTSGGEHYSGGSEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVEAYKQTHVKSA
IEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPGQRLFDAEKIRSLGGEVSHDGDF
MIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGLDLEVVTESGKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTV
GGFAPMSPRISSPMHHGGGGAPQRGGGGGGGMWRGRGRRDNELIGQTVRISQGPYKGYIG
VVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHSGMTSAHSRTPMYGSQTPMYGTGS
RTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNEEEYDFGYDD
EPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGSY
QPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQVRRLPWPIRYAVSRGLSGTPSP
MAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSNIEQGSSDWVTTDILVRVKDSFMDLM
GQTGVIRSVTGGMCSVFMQESEKVVSISSDHLEPVTPTKNNKVKVIMGEDREATGILLSI
DGDDGIVRMELDDQLKILNLRFLGRLEH
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagtgaggacagtgacttttctgacaaccagagcgagcgcagcagtgatggg
gaggccgaggaggtggaggaaaacgaggaggagaccgctagtcctgtgggcagtgacaag
gtagccgaggaagagggggaggacctggaggacgaagaggagtatgatgaagaggaggaa
gaggaggatgatgatcgtccaaggaagaagcccaggcacggggggttcatcctggacgaa
gctgatgtggatgatgagtatgaagatgaggaggatcagtgggaggaaggtgctgaagac
atcctggagaaagaagaggctgaagtgtccaacattgagcacatggctctggatgaagat
cattctggatccaggcggctgcagaacctctggagggactccagggaggaggcgttgggg
gaatactacatgaggaaatatgccaagacatctggaggcgagcattactccggaggctct
gaggagctgtctgatgacatcacccagcagcagctacttcctggagtcaaagatcccaac
ctatggacggtcaaatgtaagattggggaggaacgggcgacggccatcgcgttgatgagg
aagttcatcgcctaccagttcactgatacaccactgcagatcaagtccgtggtggccccc
gatcacgtcaaaggttacatctacgtggaggcatacaaacagacgcacgtcaagtcggcg
attgagggaatcgggaatctgagaatgggtctgtggaaccagcagatggttcccatcaag
gagatgactgatgtcctgaaggtggtcaaagaggtcactaacctgaagcctaaatcctgg
gtccgactcaagagaggcctgtacaaggatgacatcgctcaggtggattatgtggagcca
agccagaacaccatctccctgaagatgatcccgcggatcgacctggaccggatcaaggcc
aagatgagcctgaaagactggtttgccaagagaaagaagttcaagaggcctggtcagagg
ctgttcgatgcagagaagatcaggtctctaggtggggaggtgagccatgacggagacttc
atgatcttcgagggaaaccgttacagccgcaaaggtttcctgtttaagagttttgccatg
tcagctgtgatcacagacggagtaaagcccaccctgtcagagctggagaagtttgaggac
cagccagaaggactcgacttagaggtggtcacagagtcaggtaaagagcgagaacacaac
ctgcaggctggagacaatgtggaggtgtgtgagggagagttgatcaacctgcaggggaaa
atcctgagtgtggacggcaacaagatcaccatcatgcccaaacacgaggacctgaaggac
cctctggagtttcccgctcacgagctgaggaagtacttccggatgggcgaccacgtgaag
gtgattgctgggcgctacgagggcgacacgggcctcatcgtcagggtggaggagaacttc
gtcatcctgttttctgacctcaccatgcacgagttgaaggtgctgcccagagacctgcag
ctctgctctgagacggcgtcgggcgtggacgccggcgggcagcacgagtggggcgagctg
gttcagctggatccgcagacagttggagtcattgtccggctggagagggagacgtttcag
gtgctgaacatgcacgggaaggttctgaccgtccgccatcaagcagtgaaccgcaggaag
gacaaccgcttcgccgtggccttggactcggagcagaacaacatccacgtcaaagacatc
gtcaaggtgatcgacgggccgcactcgggtcgtgagggggagatccgccacctgttccga
ggctttgccttcctccactgtaaaaagttagtggaaaacggcggcatgtttgtgtgtaag
actcgacacctggtgttggcgggcgggtccaagcccagagacgtcaccaacttcacggtg
gggggtttcgctccaatgagtcctcggatcagcagccccatgcaccacggcgggggaggg
gctcctcaaagagggggtggaggaggaggcgggatgtggcgtgggaggggacgacgggac
aatgagctgattggtcagacggttcgcatctctcagggtccctacaaaggttacatcgga
gtggtgaaggacgccacagagtccacggcccgagtggagcttcactccacctgccagacc
atctccgtggaccggcagcggctgaccaccatgggagcaaagagacacagtggaatgacc
tccgcccacagtcggacccccatgtacggctcccagacccccatgtacggcaccggatca
aggacccccatgtacgggtcgcagacgccgctgcacgatggaagccgtacgcctcattat
ggctctcaaaccccgctgcatgatgggagtaggacaccaggtcagagtggagcctgggat
cccagcaaccccaacacaccttccagaaatgaagaagagtacgactttggctacgatgat
gagccttccccctcgcctcaaggctatggcggcacccccaaccctcagaccccggggtac
ccagaggtcccctcaccacaggtcaaccctcagtacaacccccaaactcctggaacgcca
gcgatgtataacacagagcagtactccccctatgcagccccctcccctcagggctcctat
cagcctagtcccagtcctcagagctaccaccaagtggcgccctcacctgttggttaccag
aacacacactctcccgccagctaccatccgacgccgtctcccatggcctatcaggtacgc
cgtctcccgtggcctatcaggtacgccgtctcccgtggcctatcgggtacgccgtctccc
atggcctatcaggccagtccaagcccgagtccagtgggttacagtccaatgacgcctgga
gcgccctctcctggagggtacaaccctcacaccccaggctccaacattgagcagggcagc
agtgactgggtgaccaccgacatcttggtccgggtcaaggactctttcatggaccttatg
ggacagactggtgttatcaggagtgtcacggggggcatgtgctccgtattcatgcaagag
agcgagaaggtggtcagcatcagctcggaccacctggaacccgtcactcccaccaaaaac
aacaaggttaaggtgatcatgggagaggacagagaggccacggggatcctcctgagcatc
gacggagatgacggcatcgtgcggatggagctggacgaccagctgaagattctgaacctg
cgtttcctgggacgcctggagcactaa
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integrated database retrieval system
