Takifugu flavidus (sansaifugu): 130536362
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Entry
130536362 CDS
T09160
Symbol
sf3b3
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130536362 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfs03021
]
130536362 (sf3b3)
03041 Spliceosome [BR:
tfs03041
]
130536362 (sf3b3)
03036 Chromosome and associated proteins [BR:
tfs03036
]
130536362 (sf3b3)
Transcription machinery [BR:
tfs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130536362 (sf3b3)
Spliceosome [BR:
tfs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130536362 (sf3b3)
Complex B
130536362 (sf3b3)
Complex C
U2 SnRNP specific factors
130536362 (sf3b3)
Chromosome and associated proteins [BR:
tfs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130536362 (sf3b3)
TFTC complex
130536362 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
130536362
NCBI-ProteinID:
XP_056908226
LinkDB
All DBs
Position
13:10387143..10398687
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AA seq
1217 aa
AA seq
DB search
MFLYNITLQRSTGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVIGSDSGRIVILEYHTSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDEALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLADNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGSM
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLVLIESDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLINPIQGVTLDQVQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVARDMILNPKSVXGGFIYTYRLVSGGEKLEFVHKTPVEDAPLAIAPFQGRVL
VGVGKLLRIYDMGKKKLLRKCENKHIPNLVTSIHTSGQRVIVTDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVAMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRAEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSLAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcacgctccagcgatctactggcatcactcacgccatccatggc
aacttctcaggaaccaagatgcaggagattgttgtttccagggggaagatcttagagttg
ctgcgcccagatgctaacacaggaaaggtgcacacgctgctcacgatggaggtgtttggc
atcatccggtccctgatggccttcagactcacaggaggaaccaaagattacatcgtcatc
gggagcgacagcggtcgcattgtcatcctggagtaccacacctccaaaaatatgtttgag
aagatccaccaggaaacttttgggaagagcggctgtcggcgcatcgtcccgggacagttc
ctggcggtcgacccaaaaggcagagctgtgatgattggagccatcgagaagcagaagctg
gtttacattctcaacagagatgcagctgccaggttgaccatctcctctccactggaggcc
cacaaagccaacacgctggtctaccacgtggtcggggtggacgtcggctttgagaacccc
atgttcgcctgtctggagatggactacgaggaagccgacaacgacccgacgggagaagcc
gctgccaacacgcagcagacgctcaccttttacgagctggacctgggtttgaaccacgtg
gtccgcaagtacagcgaagccttggaggagcacggaaacttcctcatcaccgttcctggt
ggttctgacggcccgagcggagttctgatctgctcagaaaactacatcacttacaagaac
tttggtgaccagccagacatccgctgcccaatcccacgccgcaggaacgacctagatgac
ccagagcgagggatgatattcgtctgttctgccacccacaagaccaagtccatgttcttc
ttcctggcccagacagaacagggagacatcttcaaggttacgctggaaacggatgaagaa
atggtgacagaaatccggctgaaatacttcgacaccattcctgtggcgacggccatgtgt
gtcctgaagacgggcttcttgtttgtggcctcggagtttggaaaccattacctttaccag
atcgcccacctgggggacgacgacgaagagcccgagttctcctctgcgatgccgctggag
gagggagacaccttcttcttccagccgcggcctctgaagaacctcgtgctggtggacgaa
caggagagcttgtcgcccatcatgtcctgtcagattgctgacctggccaacgaagatact
ccccagctgtatgtggcgtgtggccgggggccccggtccactctgagggtcctgcgacac
ggactggaggtctcagagatggctgtgtcagagctgcccggtaacccgaatgctgtgtgg
acagtacggagacacgtggaagatgaattcgacgcctacatcatcgtgtccttcgtcaac
gctactctggttctgtctatcggagagaccgtggaggaagtgacggactccgggttcctg
ggaaccacgcccactctgtcctgctcgctgctgggtgacgaggcgctcgtacaggtctac
ccggacggcatccggcacatccgtgcagacaagcgtgtgaacgagtggaagactcctggc
aagaagaccatcgtccgctgtgctgtcaatcagagacaagtggttatcgctctcaccgga
ggggagctggtctactttgagatggacccgaccggccagctgaacgagtacacggagcgg
aaggagatgtctgccgacgtggtgtgcatgagcctggccaacgttcccccgggcgagcag
cgctcacgcttcctggctgttgggctggctgacaacactgtgcggatcatctcgctggac
ccttcggactgcctccagcccctgagcatgcaggcgctgcccgctcagccagagagcctg
tgtatcgtggagatgggtggcgtggagaagcaggacgagctcggggagaaggggagcatg
ggcttcctctacctcaacattggcctccagaacggggtgctgctgaggacggttctggac
ccggtgaccggcgacctctccgacaccagaacacgttacctgggctcccgacccgtcaaa
ctcttcagagtcaggatgcagggccaggaggctgttctggccatgtccagccgctcctgg
ctcagttactcctaccagtcccgcttccacctgacccccctctcctatgagactctggag
tacgcctccggctttgcctcggagcagtgtcctgaaggcatcgtggccatctccaccaac
acgctgagaattttggctttggagaagttgggggccgtcttcaaccaggtggcgtttcct
ctgcagtacactcccaggaagtttgtcatccacccggagaccaacaacctggttctgatc
gagagcgaccacaacgcctacaccgaggccaccaaggctcagaggaagcagcagatggcc
gaggagatggtggaggccgccggtgaggacgagagagagctggccgccgagatggccgcc
gccttcctgaacgagaatcttcccgaagctattttcggcgctccgaaggcgggggcgggg
cagtgggcctcgctggtgcggctcatcaaccccatacagggcgtcaccctggaccaggtg
cagctggagcagaacgaggctgcgttcagtgtcgccgtgtgtcgcttccccaacacagga
gacgattggtacgtcctggtgggcgtggccagagacatgatcctcaaccccaagtccgtg
nggggggggttcatctacacgtaccgcctcgtcagcggaggggagaagctggagtttgtg
cacaagaccccggtggaggacgcgcctctggccatcgctccgtttcagggacgggttctg
gtgggagtcgggaagctgctgaggatttacgacatgggcaagaagaagctgctccgcaag
tgtgagaacaagcacatcccaaacctggtgaccagcatccacaccagcggccagcgcgtg
atcgtgaccgacgtgcaggagagcctgttctgggtccggtaccggcgcaacgagaaccag
ctcatcatcttcgccgatgacacctacccgcgctgggtcaccaccgcctgcctgctggac
tacgacaccatggcctcggcagacaagttcgggaacatcagcatcgtgcgtctccctccc
aacaccagtgatgatgtggatgaggacccgacgggcaacaaggccttgtgggacaggggt
ctgctgaacggagcctcccagaaggcggaggtggccatgaactaccacgtgggggagacg
gtgttgtccctgcagaagaccacgctgatcccggggggctccgagtccctggtctacacc
accctgtccggaggcatcgggatcctggtcccgttcacgtcccacgaggaccacgacttc
ttccagcacctggagatgcacatgcgcgccgagttcccccccctgtgtggcagagaccac
ctcagcttccgctcctactacttcccggtcaagaacgtgatcgacggagatctgtgcgag
cagttcaacagcatggacccccacaagcagaagagcttggccgaggagctggaccggacc
ccccccgaggtctccaagaagctggaggacatccgcacccgctacgccttctaa
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integrated database retrieval system
