Takifugu flavidus (sansaifugu): 130536384
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Entry
130536384 CDS
T09160
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130536384 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130536384 (edc4)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130536384 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
130536384 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Bacillus_HBL
WDR55
EIF3I
hGDE_central
Motif
Other DBs
NCBI-GeneID:
130536384
NCBI-ProteinID:
XP_056908267
LinkDB
All DBs
Position
13:complement(10836204..10847629)
Genome browser
AA seq
1389 aa
AA seq
DB search
MASSSDIDIEGATQHLRDILKLDCHGNGTDAPTSDGQRMPSFNEELNGLLGASLLANTEH
SAISQSTRPTSTDTSSSQDTQIICLSGDDSSTNIPITANNVEIVASQDSSINSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVSNAFVAYAIKGANNHAMIRILSVCFAERSLLKGFTGA
VTDLAFAHIDSSLLGCVDEAGNLMVWQLTCNGDKIVDQVVVHIRRPEETQLSSYRRIIWC
PFIQDDSEDGQDVTSQTLALLHEDMAEVWDLEVLRSNNSSWPISVTDVKEGLITVKGHMQ
RVSEGALSPDGTVLATASHDGYIKFWQMYIEAGQDKPRCLHELRPHGGRPLSCLLFCDNH
KRQDPEVPFWRFLITGADQNQELKLWCTVSWNCLQTIRFSPDLLNSTVFPSLKARLDLSA
EYLILTDVQRKVLYVMELRQDLDNGKAMFTAVSQFLMTHPVLSFGVREVTYSRLQNTELL
PTEEESESLSTEGTQGPTESKTGILIKLYCVHTKSLQDVQIWFQPNAGSRFAPFLPRSDS
QDAFGFSDNLTDQSSDKESGTGSQTDLRKIPSLPAPSDFLSNSGSSGGTVPKLMTPDAFM
TPSASVEVPASPGSSASSLTIVTAISSNSDSTNRAIDDVSQSPNRAENTSSGSLNLSTSS
PRAPSAVLLPGLDSLHALSSPSGPLGLDGPQVLDSPLLPPLASPTRARSPDVISSASTAL
SQDMPEIASQTLQHQRGLVSSLEPLPLPVLHTDSMASAASALHLLTSPHSANNDSLLPLE
LGGADGPVGGAVESEPRLNLTPSLLENAFSQDNAGAGPGSSEGSISHTHWPAAPDITRET
RNSLRDNGLGDCLGEESHDRNLSSPYHRRSYHILQNDPNQDGGADQSEPDDETKGLASSS
ENCGGARSSHRLPVKDWKSSPRGSPKLWRKTKRDNGESSQARQLDHGQKTADMEELLMVL
RNQQRELMELRGQIETMQSSILSQVERVLTNHQEQEQGKLGRLVTEGQSQQQQLQEQLGQ
QLSHTLTSVLSSRVDKLLREEMKKTVPQTITKSLEPVVGLLSNTVAAKLTSVEATLKDNV
TKVVKSKNTTDAIGRAAAEAMQGPIQTAYKDTFQSIVLPVFERGCQSMFQQINDSFKQGT
QEYIQQLETHMKQKDQETRDPLLGQLQQMIDSFQSSSDQLANNITANVRVELQHQLQMMV
GNLQESILSQVQRIIKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPTTHLDYQSQQANI
LQLLQQGQLNQAFQQALSATDLNLVLYVCETIESQQVFGQHSCPLSQPVLLSLIQQLSSN
LTTRSELKISYLEDAVMNLDHTDPLTRDHMATVLTQVRQKLFAFLQHDPHSPLGKKARRL
MMMLQGLVN
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccagctccgatatagatattgagggtgcgacacaacatctccgagatatcctg
aagctcgactgccatgggaacggtacagatgcaccaacaagtgatggacagagaatgccc
tcttttaatgaagagctgaatgggttattgggcgctagtcttctggccaacacggagcat
tcagccatatctcaatccaccagacccacttccacagacaccagcagctcccaggacacc
cagataatctgcctgtctggtgacgatagctccaccaacattcccatcactgccaacaat
gtggagatcgtggcgagccaagattccagcatcaacagcaaggctcgtggcagcaacaag
gtaaaaatccaaccagttgccaagtatgactgggaacacaagtattattatgggagactg
atcgctgtgtccaacgccttcgtggcatatgccataaaaggagcaaacaaccacgccatg
atccggattctgagcgtttgctttgctgagcgctccctgctgaagggcttcaccggagcc
gtcacagatctggcctttgcacacatcgactcctcactcttgggctgcgtggacgaagcc
ggcaacctgatggtctggcagctcacctgcaatggagacaagatagttgatcaggtagtg
gttcacattcgacgaccagaggagacccaactgagctcctaccggcgaatcatctggtgc
ccgttcatccaagatgacagtgaagatggccaagatgtcaccagtcaaacattggctctc
ctgcatgaagatatggctgaagtgtgggacctggaggtcctgaggtcaaacaacagtagc
tggcccatcagtgtaacggatgtcaaagaaggcctcatcacagtcaaaggacatatgcag
cgggtcagcgaaggtgccctgtctccagacggcaccgtgttagccacggccagccacgat
ggatacatcaagttctggcagatgtacatcgaagcggggcaagacaagccaaggtgtctt
catgagctgaggcctcacggagggcggccgctctcgtgccttcttttttgtgataaccac
aagcggcaggatcccgaggttcccttctggcggttcctgatcaccggagcagatcagaac
caggagttgaagctgtggtgcaccgtctcctggaactgcttacagaccatcaggttttct
ccagatctgttaaactcaacagtcttcccaagcctgaaggccagactagacctgtctgct
gagtatctgatcctcaccgatgtgcagaggaaggttctgtacgtgatggagctgcgacag
gatctggataacggcaaggccatgttcacagcagtgtctcagttcctgatgacgcaccct
gtgctcagcttcggcgtgcgtgaggtgacctacagcagactgcaaaacaccgagctcctc
cccacggaggaggagagtgagagtctatcaacagaaggtactcaaggacccacagaatca
aagaccggcatcctaattaagctgtactgtgtccacaccaagagtctgcaggatgtccag
atctggtttcagccaaatgcaggctccaggttcgcaccattcctgccacgttcagattcc
caagatgcttttggtttttcagacaatctcaccgaccagagttctgacaaggaatcggga
accggctcccagacggacctgaggaagatcccctcacttcctgcaccctctgacttcctg
tcaaactcgggcagcagtggcgggacagtgcctaagctgatgactcctgatgcttttatg
acaccgagcgcatcggtagaggtaccagcttctcctggcagcagcgccagcagcctcact
attgtgacggctatcagcagcaactcagactccactaacagagctattgatgacgtcagt
cagagtccaaacagggcagaaaacaccagcagcggtagtttaaatctctctaccagcagc
cccagagctccttctgctgtgctgctgcctggactggacagcctgcacgctctgtcgtcc
cccagtggcccacttgggctggatggtcctcaagttctggattctccactgttgcccccc
ctggcctctccaaccagggcccgctcccctgacgtaatctcctcggcttccacggcgctc
tcccaggacatgccggagattgcgtcccagactctgcagcatcagcgcggactggtttcc
agtttggagcccttgcctctccccgtcctccacacggactctatggcctctgctgcgtct
gccttacacctcctcacctcaccacatagtgccaacaatgacagcctcttgccgcttgaa
ctcggaggtgcagatgggcctgtgggtggcgctgtggagtcagagccaagactcaacctg
accccttctctacttgagaacgctttctcccaggacaacgccggggcggggccagggtcc
tccgagggcagcattagccacacgcactggccagcggcgcccgacatcaccagagaaacc
aggaacagtctgagggacaacggccttggagactgtttaggggaggagtcacatgacaga
aacctgagctctccgtaccaccgacgctcctaccacatcctacagaatgaccccaatcag
gacgggggtgcggaccaaagcgagcccgatgacgagacgaagggcctggcgtcatcttca
gagaactgcggcggcgctcgctcgtctcacagactccccgttaaggactggaaatcgtcc
ccgcggggctccccgaagctgtggaggaagaccaagagggataacggcgaatcgtctcag
gcccggcagctggaccacggtcagaaaactgcagatatggaggaactcttgatggtcctc
cggaaccagcagagagaactgatggagctccgtggtcaaatcgaaaccatgcaaagctcc
attctgtctcaggtcgagcgtgttctgaccaaccaccaggaacaagaacagggcaaactg
gggaggctagtgacagagggtcagagccagcagcagcagctccaggagcagctgggccag
cagctgagccacaccctcacctcggtgctgagcagccgcgtggacaagctgctccgcgag
gagatgaagaaaacggtgccacaaacaatcacaaagagtctggagccggtcgttggcctc
ctgagcaacacggtcgcggctaagctgaccagcgtcgaggccaccctgaaggacaacgtc
accaaggtggtcaaatccaaaaacacaacggacgccatcggccgggcggcggccgaggcc
atgcaggggcccatccagacggcctacaaggacaccttccagagcatcgtgctgcccgtc
ttcgagcgaggctgccagtccatgttccagcaaatcaacgacagtttcaaacaaggcaca
caggaatatatccagcagctggagacccacatgaagcagaaggaccaagagacccgggac
cccctgctgggccagctccagcagatgatcgacagcttccaaagctccagcgaccagctg
gccaacaacatcaccgccaacgtccgcgtcgagctgcagcaccagctacagatgatggtc
gggaatctgcaggagtccatcctgagccaggtgcagcggatcattaaaggggaggtcagc
cttgcgatgaaggagcaacaggcggcggtgacctccagcatcatgcaggccatgaggtcc
gcagcagggacccccgtccccaccacacacctggactaccagagccagcaggccaacatc
ctgcagctgctgcagcagggccagctcaaccaggcctttcagcaggcgctctcggccaca
gacctgaacctggtgctgtacgtgtgcgagaccatcgagtcccagcaggtgttcgggcag
cactcctgccccctcagccagccggtgctgctgtccctcatccagcagctctcctccaac
ctcaccacccgttcggagctgaagatcagctacctggaggacgccgtgatgaatctggac
cacaccgaccccctgaccagggaccacatggccaccgttctgacccaggtccgacagaag
ctgttcgccttcctgcagcacgacccccacagccccctgggcaagaaggcgcggcgcctc
atgatgatgctccagggcctggtcaattag
DBGET
integrated database retrieval system
