Takifugu flavidus (sansaifugu): 130537394
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Entry
130537394 CDS
T09160
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfs03021
]
130537394 (scaf4a)
03041 Spliceosome [BR:
tfs03041
]
130537394 (scaf4a)
Transcription machinery [BR:
tfs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130537394 (scaf4a)
Spliceosome [BR:
tfs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
130537394 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130537394
NCBI-ProteinID:
XP_056910177
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All DBs
Position
14:6579398..6587984
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AA seq
1163 aa
AA seq
DB search
MEAVNAFNFELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIRKCKPEYKV
AGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITETFENLCLCPVEDRSKIVRVLNLWQKN
GVFKIEVIQPLLDMAAASSSAAAPYSGTDEPGSSPTPAKEPVTTVTANSTATSAAHLQTS
DAIAAVAQLFQSSQGQQLQQMLQTFQQPVKPESNCHLPAHIVPTHVPNVGAGLNMAAPQP
APPAEPCQQKTAFDKKLLDRFDYDDEPEASEESKKDEAASQQTFMQQPPAFLQHLEHFNP
QMLNVTQEQFPLHPNGQPQAFGLPPGQNFPAMMPPMGHALPGQLLPGSAGPPGFPGAFPP
HQQQEMSMEMDRSSLGEDRHVRQSPSNCWSPKRRRSRSNSRTRMSKHRRSRSRSRDRHHY
SPHARSQERRDRDKERERRQKGLPPPKSESLSICSTTLWVGQLDKRTQQQDVACLLEEFG
QIESINMIPPRGCAYIVMTHRQDAYRALQKLSRGSYKVNQKAIKIAWALNKGIKSELKQF
WDVELGVTYVPWSKIREVQLEELKEGGVLDVETLAPEWAAARKAFELPEEHNHNGRSEAQ
HPEEMSVMSVGAPVPQVPPAQQPVVGVGSLQPPGFSGAMGMPQPSFPPGIPPPPFIRPAF
NPLQMPPGFPPPGAMTLGPPPPSKVEDPPLDPGGLSSRRSDEGLEAANIFNNQMGPIGNQ
VGGPAASLPGGPPGSLLPPSGGLLGARPGLIPLQRPPVPPPPHMQRFPPPHGPRPSPPNM
PPIPPQILPRGPHPQLMHHEPQQSKGGFGPPPPHNMRPSFPSHMHGPPSHGPAPQVPPPH
GPPQGPPHGPPQGPPQGPPQAPPAHGPPQVPPAHGPPQVPPPQSLSPQGPPPPFFRPGGP
RVLEGPEEIDGRSFRGDRPGFRDREPERERNWDRDRDRGFGGGRRSFGEGSRGGGGGDRL
DGRDRLAGWQEDGGDLRGGGWERNRDRERDRERDRDRERDRDRERDRDRDRDRDRRGWKE
RRSSQDNERGRGRGDAAERDRGRGEGGERGRGDGGSRDRGREAAGKEGDRPRRSERRERT
TRWDRDDRLAELENMEKLQTSNSAEQPAADTGSDPGVEASQKAPESELTALPSDAAAAPA
GAPASSEASAQNERVESKQEAAS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgttaacgcttttaacttcgagctcttctcactgatggactccaagcctccg
atatctcgagcaaagatgatctccatcaccaaatctgccatcaaagccatgaaactgtac
aagcacgtggtccagattgtggagaaatttatcagaaaatgtaagcctgagtacaaggtt
gcgggtctgtacgtggtggattccattgtcaggcagtccagacatcagtttggagcagac
aaggatgtgtttggcccacgattcaccaaaaacatcacagaaacctttgagaatctctgc
ctttgcccagtggaagacaggagtaagatcgtgcgggtattgaacctgtggcagaaaaac
ggtgtgttcaagatcgaagttattcaacctctcctggacatggcggctgcgagcagcagc
gctgctgcaccgtactcaggcacagacgagcccggttcttccccaactccagccaaagaa
ccagttaccacggtaacagcaaactccactgccacatctgctgctcatctccaaacttct
gatgccattgctgcggtggcgcagctgttccagtcctcgcagggtcagcagcttcagcag
atgctccagacctttcagcagccagtgaagcctgaaagcaactgtcacctccctgctcac
atcgtccccactcacgtcccgaacgtgggcgccggcctgaacatggccgccccccaaccc
gccccgcccgctgagccctgccagcagaagacggcctttgacaagaagctgctggatcga
ttcgactacgacgacgaaccggaagcttcggaagagtcgaagaaagatgaagccgcgtcg
cagcaaacctttatgcagcagcctcctgccttcctacagcacctggagcactttaatcca
cagatgcttaacgtgacgcaggaacagttccccctgcatccaaacgggcagccccaggct
tttggtttgccacccggccaaaacttccccgcgatgatgccaccgatgggccacgcgctc
cccgggcagctcctgcctggttctgcggggccaccaggcttcccaggggcgttccccccc
catcagcaacaggagatgtctatggaaatggaccggtcctctctgggggaggaccgacat
gttcggcagtcgccctcaaactgctggtctccaaagcggaggaggtcacgctccaattct
cgcacccggatgtccaaacacaggcggtctcgctcgcgttcaagagatcgccatcactac
tcgccacacgctcgctcccaggagcggcgagacagggacaaggagcgcgagcgccggcag
aaaggcctccccccgccgaagagcgagagcctgagcatttgcagcacgactctgtgggtg
ggtcagttggacaagaggacgcagcagcaggacgtggcctgtttactggaggagttcggt
cagatcgagtccatcaatatgatccctccccggggctgtgcctatatcgtgatgacgcat
cggcaggatgcctacagggccctgcagaagctcagcagagggtcgtataaagtcaaccag
aaagccatcaagatcgcttgggctttgaacaaaggtataaaatcggagctgaaacagttc
tgggatgtggagctgggcgtcacgtacgtgccctggtctaaaatccgagaggttcagttg
gaagagctcaaagaaggaggagttttggatgtggagaccttagccccagagtgggctgca
gcgaggaaggcttttgaactcccagaggagcacaaccataatgggcgttcagaggcacag
caccccgaggagatgtctgtcatgtccgtgggtgctcctgtcccccaggtgcctccagcg
cagcagccggtggtcggcgtgggatctctgcagcctcctggcttctccggtgccatgggc
atgcctcagccttccttccccccaggcatcccccctccgcctttcatcagacctgctttc
aatcccctacagatgcctccgggttttcctcctccaggtgccatgactttaggtccccca
cctccttccaaagttgaagacccaccgttggacccaggagggctgagcagcaggaggagc
gatgaaggccttgaggctgccaatatctttaacaatcagatggggcctataggcaaccag
gtaggtggacctgcagcttctctcccaggaggtcctccaggaagtctcctgcccccttcg
ggtggtctgctcggtgcacggccaggtctaatcccactccaacgccctccagtcccccca
cctccacacatgcagcgttttcctccgcctcacggaccgcgcccctctccccccaacatg
cctcccatccccccacagatattacctagagggccgcaccctcagctgatgcatcatgag
ccgcagcaatccaaaggaggatttggtccaccccctcctcataatatgaggccttctttt
ccctcacacatgcatggccctccttctcatggccccgcccctcaggtcccgcctcctcac
ggtcctcctcaaggacctcctcacggtcctcctcaaggacctcctcaaggacctcctcaa
gcacctcctgcacatggacctcctcaagttcctcctgcacatggacctcctcaagttcct
ccacctcagagcctttctccgcaaggcccgcctcctccattcttcagacccggtggccct
cgtgttctggaggggccagaagaaatagacggaagatcattcaggggagacagacccgga
ttcagggaccgagagccagaaagggagaggaactgggatcgagacagagacagaggtttt
ggtggtggaaggcgttcttttggtgagggaagtcgaggagggggaggtggtgatagacta
gatgggagagacaggctcgcagggtggcaggaggatggaggtgatctccggggtggcggg
tgggaaagaaacagggatcgggaaagggaccgtgaaagagaccgggaccgcgaaagggac
cgggaccgcgaaagggaccgagaccgggaccgggacagagacagacgagggtggaaagaa
aggcgaagcagccaggataacgaacgggggcggggaagaggcgatgctgccgagagggat
cgagggcggggtgagggaggagaacggggaagaggggacggagggagtcgagacagggga
cgcgaagccgctggaaaagaaggggacagaccgaggcggtcggaacggcgagagaggacc
acacggtgggacagagacgatcgcctggcagaactagaaaacatggaaaaacttcagacc
tctaacagcgcggagcaacctgctgccgacacgggcagcgacccaggcgtggaagcctct
cagaaggcccccgagtcggaactcacagctcttccctcggacgccgccgccgctcctgca
ggggcgccggcgtcctctgaggcctcggctcagaatgagcgcgtagaatcaaaacaggaa
gcagcatcatag
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integrated database retrieval system
